Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,882,715 – 14,882,835 |
Length | 120 |
Max. P | 0.956219 |
Location | 14,882,715 – 14,882,835 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.94 |
Mean single sequence MFE | -35.37 |
Consensus MFE | -19.71 |
Energy contribution | -19.47 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.61 |
Mean z-score | -1.47 |
Structure conservation index | 0.56 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14882715 120 + 20766785 AUGCUCGUGUGAUCCGGUCCUGAGAUCUCAAGAUCAAACCUAAUAUUUGUAUCUGAAUUACUCGAUUUUUCCAAAAUAGUCAGAGUGGGAAUAUAUUCCCUAUUUGGCUCGGGACCAGGA ............(((((((((((((((....))))........(((((......(((((....))))).....)))))((((((..(((((....)))))..)))))))))))))).))) ( -34.10) >DroPse_CAF1 61793 120 + 1 AUACUCGUGUGGUCGGGCCCCGAGAUCUCUAGUGUGAACUUUAUGUUUUUAGCAGAGCUGCUGGACUUGUCGAUUAUGCUCAAUGUGGGCAAGUAGUCCUUGUUGGGCUCUGGGCCCGGG .(((....))).(((((((((((.(..((((((..((((.....))))..(((...)))))))))..).))).....((((((((.((((.....)))).))))))))...)))))))). ( -43.70) >DroGri_CAF1 60787 120 + 1 AUGCUUGUAUGAUCCGGUCCUGAAACCUCCAAAGUGAAUAUAAUAUUUGUCAUCGAAGUGCUCUCUUUGUUUAAUAUUUUCAACGUUGGCAUAUAGGCUUUGUUGGGCUCGGGACCAGGC .............((((((((((..((..((((((..........((((....))))(((((..(.(((...........))).)..)))))....))))))..))..)))))))).)). ( -32.80) >DroSim_CAF1 56597 120 + 1 AUGCUCGUGUGAUCCGGCCCUGAGAUCUCAAGAUCAAACUUAAUAUUUGUAGCUGAUUUACUCGAUUUUUCCAAAAUCGUCAGAGUGGGAAUGUAUUCCCUAUUUGGCUCGGGGCCAGGU .............((((((((((((((....))))............................(((((.....)))))((((((..(((((....)))))..)))))))))))))).)). ( -35.40) >DroYak_CAF1 56723 120 + 1 AUGCUCGUGUGAUCUGGCCCUGAGAUCUCCAGAUCAAAUUUAAUAUUUGUAUCCGAUUUGCUCGAUUUAUCCAAAAUAGUCAGUGUGGGAAUAUACUCCCUAUUUGGCUCGGGACCAGGC ............(((((.((((((.......((.((((((..(((....)))..)))))).)).......(((((.(((..((((((....))))))..)))))))))))))).))))). ( -32.00) >DroAna_CAF1 63280 120 + 1 AUGCUGAUGUGAUCAGGCCCAGAGAUCUCCAGAUCGAAUUGUAUGUGGGUAGCAGAUUUACUCGACUUGUCCAGAAUUUGAAGAGUAGGAAUAUAUCCCUUGUUGGGUUCUGGGCCAGGC ....(((.((((((..(((((.(((((....))))........).)))))....)).))))))).((.((((((((((..(.(((..(((.....)))))).)..)))))))))).)).. ( -34.20) >consensus AUGCUCGUGUGAUCCGGCCCUGAGAUCUCCAGAUCAAACUUAAUAUUUGUAGCAGAUUUACUCGAUUUGUCCAAAAUAGUCAGAGUGGGAAUAUAUUCCCUAUUGGGCUCGGGACCAGGC ...............(((((((((...(((((..(((((.....))))).....................................((((......))))..)))))))))))))).... (-19.71 = -19.47 + -0.24)
Location | 14,882,715 – 14,882,835 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.94 |
Mean single sequence MFE | -31.44 |
Consensus MFE | -18.43 |
Energy contribution | -18.60 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.67 |
Mean z-score | -1.95 |
Structure conservation index | 0.59 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.956219 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14882715 120 - 20766785 UCCUGGUCCCGAGCCAAAUAGGGAAUAUAUUCCCACUCUGACUAUUUUGGAAAAAUCGAGUAAUUCAGAUACAAAUAUUAGGUUUGAUCUUGAGAUCUCAGGACCGGAUCACACGAGCAU ..(((((((.(((((.(((((((((....)))))..(((((....(((((.....)))))....)))))......)))).)))))((((....))))...)))))))............. ( -33.80) >DroPse_CAF1 61793 120 - 1 CCCGGGCCCAGAGCCCAACAAGGACUACUUGCCCACAUUGAGCAUAAUCGACAAGUCCAGCAGCUCUGCUAAAAACAUAAAGUUCACACUAGAGAUCUCGGGGCCCGACCACACGAGUAU ..(((((((.(((..(..((((.....)))).......(((((......((....)).((((....))))...........))))).......)..))).)))))))............. ( -31.80) >DroGri_CAF1 60787 120 - 1 GCCUGGUCCCGAGCCCAACAAAGCCUAUAUGCCAACGUUGAAAAUAUUAAACAAAGAGAGCACUUCGAUGACAAAUAUUAUAUUCACUUUGGAGGUUUCAGGACCGGAUCAUACAAGCAU ..(((((((.(((.((..(((((...(((((....(((((((.....................)))))))........)))))...)))))..)).))).)))))))............. ( -26.30) >DroSim_CAF1 56597 120 - 1 ACCUGGCCCCGAGCCAAAUAGGGAAUACAUUCCCACUCUGACGAUUUUGGAAAAAUCGAGUAAAUCAGCUACAAAUAUUAAGUUUGAUCUUGAGAUCUCAGGGCCGGAUCACACGAGCAU ..(((((((.(((.......(((((....))))).(((.((((((((.....)))))).............(((((.....))))).))..)))..))).)))))))............. ( -33.50) >DroYak_CAF1 56723 120 - 1 GCCUGGUCCCGAGCCAAAUAGGGAGUAUAUUCCCACACUGACUAUUUUGGAUAAAUCGAGCAAAUCGGAUACAAAUAUUAAAUUUGAUCUGGAGAUCUCAGGGCCAGAUCACACGAGCAU (((((((((.(((.......(((((....)))))..........(((..(((...((((.....))))...(((((.....))))))))..)))..))).))))))).((....)))).. ( -32.20) >DroAna_CAF1 63280 120 - 1 GCCUGGCCCAGAACCCAACAAGGGAUAUAUUCCUACUCUUCAAAUUCUGGACAAGUCGAGUAAAUCUGCUACCCACAUACAAUUCGAUCUGGAGAUCUCUGGGCCUGAUCACAUCAGCAU ((..((((((((.(((.....)))...........(((((((.....))))((..((((((....................))))))..)))))...))))))))((((...)))))).. ( -31.05) >consensus GCCUGGCCCCGAGCCAAACAAGGAAUAUAUUCCCACUCUGACAAUUUUGGACAAAUCGAGCAAAUCAGCUACAAAUAUUAAAUUCGAUCUGGAGAUCUCAGGGCCGGAUCACACGAGCAU ..(((((((.(((.......(((((....))))).................((.(((((((....................))))))).)).....))).)))))))............. (-18.43 = -18.60 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:51 2006