Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,606,227 – 2,606,323 |
Length | 96 |
Max. P | 0.998159 |
Location | 2,606,227 – 2,606,323 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 72.62 |
Mean single sequence MFE | -30.34 |
Consensus MFE | -15.95 |
Energy contribution | -14.87 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.42 |
Mean z-score | -2.95 |
Structure conservation index | 0.53 |
SVM decision value | 3.02 |
SVM RNA-class probability | 0.998159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2606227 96 + 20766785 AACAUUCUUGCAAGUCAAUUAAGUUUUUCGCAGUGUACCACUGCUGGCGAAAGCCGGAGACAAGGAAGAAGUCGAGGCAAAGCAAAGAUGCUUUAU ..(((..((((..(((..(..(.((((((((((((...)))))).(((....)))(....)...)))))).)..))))...))))..)))...... ( -30.30) >DroPse_CAF1 45805 86 + 1 -AUAUAUCUGCACUUC-------CUUGCCUCUGUCUAGCUGUGUUGGCGAAAGCCAGAGCAGAGGAGGAAGC--AGCCAAGGCAAAGAUGCUUUAU -......((((..(((-------((..(((((((.........(((((....))))).))))))))))))))--))..((((((....)))))).. ( -32.20) >DroSec_CAF1 40916 96 + 1 AUCAUUCUUGCAAGUCAAUUGAGUUUUUCGCAGUGUACCACUGCUGGCGAAAGCCGGAGACAAGGAAGAAGUCGAGGCAAAGCAAAGAUGCUUUAU ..(((..((((..(((..((((.((((((((((((...)))))).(((....)))(....)...)))))).)))))))...))))..)))...... ( -34.50) >DroEre_CAF1 39836 94 + 1 --CAUUCUGGCAAUUUAAUCUGGUUUCUCGCAGUGCACUACUGCUGGCGAAAGCCGGAGACAAGGAAGAAGUCGAGGCAAGGCAAAGAUGCUUUAU --.......((.((((..(((.((((((.((((((...)))))).(((....)))))))))..)))..))))....))((((((....)))))).. ( -27.70) >DroYak_CAF1 38603 77 + 1 --UACU-----------------UUUCUCGCAGUGUACUUCUGCUGGCGAAAGCCGGAGACAAGGAAGAAGUCGAGGCAAAGCAAAGAUGCUUUAU --....-----------------......((..((.((((((.(((((....)))(....)..)).))))))))..))((((((....)))))).. ( -26.60) >DroPer_CAF1 53224 86 + 1 -AUAUAUCUGCACUUC-------CUUUCCUCUGCCUAGCUGGGUUGGCGAAAGCCAGAGCAGUGGAGGAAGC--AGCCAAGGCAAAGAUGCUUUAU -......((((.....-------..(((((((.....((((..(((((....)))))..)))))))))))))--))..((((((....)))))).. ( -30.71) >consensus _ACAUUCUUGCAAUUC_______UUUUUCGCAGUGUACCACUGCUGGCGAAAGCCGGAGACAAGGAAGAAGUCGAGGCAAAGCAAAGAUGCUUUAU .......................(((((..(((.......)))(((((....)))))......)))))..........((((((....)))))).. (-15.95 = -14.87 + -1.08)
Location | 2,606,227 – 2,606,323 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 72.62 |
Mean single sequence MFE | -25.94 |
Consensus MFE | -7.02 |
Energy contribution | -7.80 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.15 |
Mean z-score | -2.51 |
Structure conservation index | 0.27 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2606227 96 - 20766785 AUAAAGCAUCUUUGCUUUGCCUCGACUUCUUCCUUGUCUCCGGCUUUCGCCAGCAGUGGUACACUGCGAAAAACUUAAUUGACUUGCAAGAAUGUU .(((((((....)))))))....((((((((.(..(((...(((....))).((((((...)))))).............)))..).))))).))) ( -27.20) >DroPse_CAF1 45805 86 - 1 AUAAAGCAUCUUUGCCUUGGCU--GCUUCCUCCUCUGCUCUGGCUUUCGCCAACACAGCUAGACAGAGGCAAG-------GAAGUGCAGAUAUAU- .(((.(((....))).)))((.--(((((((((((((.(((((((...........)))))))))))))..))-------)))))))........- ( -32.10) >DroSec_CAF1 40916 96 - 1 AUAAAGCAUCUUUGCUUUGCCUCGACUUCUUCCUUGUCUCCGGCUUUCGCCAGCAGUGGUACACUGCGAAAAACUCAAUUGACUUGCAAGAAUGAU .(((((((....))))))).......(((((.(..(((...(((....))).((((((...)))))).............)))..).))))).... ( -25.80) >DroEre_CAF1 39836 94 - 1 AUAAAGCAUCUUUGCCUUGCCUCGACUUCUUCCUUGUCUCCGGCUUUCGCCAGCAGUAGUGCACUGCGAGAAACCAGAUUAAAUUGCCAGAAUG-- .....(((....)))((.((.......(((......((((.(((....))).(((((.....)))))))))....))).......)).))....-- ( -19.94) >DroYak_CAF1 38603 77 - 1 AUAAAGCAUCUUUGCUUUGCCUCGACUUCUUCCUUGUCUCCGGCUUUCGCCAGCAGAAGUACACUGCGAGAAA-----------------AGUA-- .(((((((....))))))).............(((.((((.(((....))).((((.......)))))))).)-----------------))..-- ( -21.00) >DroPer_CAF1 53224 86 - 1 AUAAAGCAUCUUUGCCUUGGCU--GCUUCCUCCACUGCUCUGGCUUUCGCCAACCCAGCUAGGCAGAGGAAAG-------GAAGUGCAGAUAUAU- .(((.(((....))).)))((.--(((((((((.((((.((((((...........)))))))))).)))..)-------)))))))........- ( -29.60) >consensus AUAAAGCAUCUUUGCCUUGCCUCGACUUCUUCCUUGUCUCCGGCUUUCGCCAGCAGAGGUACACUGCGAAAAA_______GAAUUGCAAGAAUAU_ .....(((....)))...........(((............(((....))).((((.......))))))).......................... ( -7.02 = -7.80 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:00 2006