Locus 4549

Sequence ID 2R_DroMel_CAF1
Location 14,878,361 – 14,878,459
Length 98
Max. P 0.565028
window7293

overview

Window 3

Location 14,878,361 – 14,878,459
Length 98
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 89.90
Mean single sequence MFE -21.58
Consensus MFE -19.79
Energy contribution -19.41
Covariance contribution -0.39
Combinations/Pair 1.14
Mean z-score -1.15
Structure conservation index 0.92
SVM decision value 0.06
SVM RNA-class probability 0.565028
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14878361 98 + 20766785
GCCUAUCGCUGGAUGUAAUCGUUUUAUGCGCCGAA-AUCGACGAUUAUAAUCAUAAUAUUUAAUUAUUAUCGCUGCCAUGGACGCGAUAAGAAAUCUAA
.....((..(((.((((((((((..((........-)).)))))))))).))).............(((((((..(....)..)))))))))....... ( -18.50)
>DroSec_CAF1 50175 98 + 1
GCCUAUCGCUGGAUGUAAUCGUUUUAUGCGCCGAA-AUCGACGAUUAUAAUCAUAAUAUUUAAUUAUUAUCGCUGCCAUAGACGCGAUAAGAAAUCCAC
.........(((((...(((((((((((.((((..-..)).((((.(((((...........))))).))))..)))))))).))))).....))))). ( -19.40)
>DroSim_CAF1 52422 98 + 1
GCCUAUCGCUGGAUGUAAUCGUUUUAUGCGCCGAA-AUCGACGAUUAUAAUCAUAAUAUUUAAUUAUUAUCGCUGCCAUGGACGCGAUAAGAAAUCCAC
.........((((((((((((((..((........-)).)))))))))..................(((((((..(....)..)))))))...))))). ( -20.40)
>DroEre_CAF1 50914 98 + 1
GCCUAUCGCUGGAUGUAAUCGUUUUAUGCGCCGAA-AUCGACGAUUACAAUCAUAAUAUUUAAUUAUUAUCGCUGCCAUGGAGGCGAUAAGAGUUCCAC
.........((((((((((((((..((........-)).)))))))))).................((((((((.(....).))))))))....)))). ( -23.70)
>DroYak_CAF1 52292 98 + 1
GCCUAUCGCUGGAUGUAAUCGUUUUAUGCGCCGAA-UUCGACGAUUAUAAUCAUAAUAUUUAAUUAUUAUCGCUGCCAUGGUGGCGAUAAGAAGUCCAC
.........((((((((((((((..((.......)-)..)))))))))..................(((((((..(....)..)))))))...))))). ( -27.10)
>DroAna_CAF1 58377 99 + 1
ACCUAUCGCGGGAUGUAAUCGUUUUAUGUGGCAAAAACUGAAGAUUAUAAUCAUAACAUUUAAUUUUUAUCGCCUGAAUUCGCGCGAUAAGCCAUCCAC
...(((((((.((.........((((.(((..(((((.((((..((((....))))..)))).)))))..))).)))).)).))))))).......... ( -20.40)
>consensus
GCCUAUCGCUGGAUGUAAUCGUUUUAUGCGCCGAA_AUCGACGAUUAUAAUCAUAAUAUUUAAUUAUUAUCGCUGCCAUGGACGCGAUAAGAAAUCCAC
..........(((((((((((((................)))))))))).................(((((((..(....)..)))))))....))).. (-19.79 = -19.41 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:49 2006