Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,869,290 – 14,869,392 |
Length | 102 |
Max. P | 0.692991 |
Location | 14,869,290 – 14,869,392 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 91.91 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -20.28 |
Energy contribution | -20.53 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.09 |
Mean z-score | -1.62 |
Structure conservation index | 0.86 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14869290 102 + 20766785 AGCCAAAACAUCUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCACACAC--ACAUG .(((((((..((((((.((......)).....((((.......))))))))))..)))))..)).......(((....((((.......))))...)--))... ( -24.60) >DroSec_CAF1 41241 102 + 1 AGCCAAAACAUCUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCACACAC--ACAUG .(((((((..((((((.((......)).....((((.......))))))))))..)))))..)).......(((....((((.......))))...)--))... ( -24.60) >DroSim_CAF1 43394 102 + 1 AGCCAAAACAUUUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCACACAC--ACAUG .(((((((..((((((.((......)).....((((.......))))))))))..)))))..)).......(((....((((.......))))...)--))... ( -22.00) >DroEre_CAF1 41719 100 + 1 AGCCAAACCAUCUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCAC----AUACAUG .((((((...((((((.((......)).....((((.......))))))))))...))))..)).......(((((.((....)).)..))))----....... ( -22.10) >DroYak_CAF1 43102 104 + 1 AGCCAAAACAUCUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCACGCACACAUACG .(((((((..((((((.((......)).....((((.......))))))))))..)))))..)).......(((....((((.......)))).)))....... ( -26.20) >DroAna_CAF1 45367 95 + 1 AGCCAAAACAUCUGGCAGCCAAUUAGCGUAAUCCAGUUAGCUCCUGGGCCAAAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUGGAGCUACAC--------- .((((.......)))).((......))(((.(((((((.(((....))).......((((..((.......))..))))..)))))))..)))..--------- ( -22.10) >consensus AGCCAAAACAUCUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCACACAC__ACAUG .(((((((..((((((.((......)).....((((.......))))))))))..)))))..))..............((((.......))))........... (-20.28 = -20.53 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:46 2006