| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,868,637 – 14,868,733 |
| Length | 96 |
| Max. P | 0.823297 |
| Location | 14,868,637 – 14,868,733 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 80.88 |
| Mean single sequence MFE | -34.40 |
| Consensus MFE | -16.00 |
| Energy contribution | -16.83 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.97 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14868637 96 + 20766785 AGUCCCCUUGAAAUGCAUUGC---UCUUUUGCU--GGCCAAGCACAAAAGUCAUUGGCCGGGUGGAAAGCUGCACUGCAAUCCAG-CAGCACGAAUAAGUCA ......((((...((((..((---(.(((..((--((((((..((....))..)))))).))..))))))))))((((......)-)))......))))... ( -27.10) >DroSim_CAF1 42732 93 + 1 ---CCUCUUGGAAUGCAUUGC---UCUUUUGCU--GGCCAAGCACAAAAGUCAUUGGCCGGGUGGAAAGCUGCACUGCAAUCCAG-CAGGACGAAUAAGUCA ---.((.(((((.((((.(((---.(((((.((--((((((..((....))..))))))))...)))))..))).)))).)))))-.))(((......))). ( -35.60) >DroEre_CAF1 41064 92 + 1 ---C-CCUUGGAAUGCAUUGC---UCUUUUGCU--GGCCAAGCACAAAAGUCAUUGGCCGGGUGGAGAGCUGCAGUGCAAUCCAG-CAGCACGAAUAAGUCA ---.-..(((((.((((((((---(((((..((--((((((..((....))..))))))))..)))))...)))))))).)))))-................ ( -34.70) >DroYak_CAF1 42429 93 + 1 ---C-CCUUGGAUUGCAUUGC---UCUUUUGCU--GGCCAAGCACAAAAGUCACUGGCCGGGUGAAAAGCUGCACUGCAAUCCAGACAGCACGAAUAAGUCA ---.-...(((((((((.(((---.(((((.((--(((((...((....))...)))))))...)))))..))).)))))))))(((...........))). ( -33.30) >DroAna_CAF1 44662 94 + 1 GUGCCCCCUG--UUGCACAGC---CCUCUGGCUGCGGCCAAGACCAAAAGUCAUUGGCCGGGACAAUAGCUGCACUGCAA--CAG-GAGCAUGAAUAAGUCA ((((..((((--(((((((((---(....)))))((((((((((.....))).)))))))...............)))))--)))-).)))).......... ( -41.30) >DroPer_CAF1 42607 93 + 1 ---GACGCAGGAGUGCAUUGCAUUUCUGUGGCU--GGCCAAGUGCAGAAGUCAUUGGCCGGGAC-AAUGCUGCUGUGCAA--CAG-GAACAUGAAUAAGUCA ---..(((((((((((...))))))))))).((--((((((..((....))..))))))))(((-..(((......))).--((.-.....)).....))). ( -34.40) >consensus ___CCCCUUGGAAUGCAUUGC___UCUUUUGCU__GGCCAAGCACAAAAGUCAUUGGCCGGGUGGAAAGCUGCACUGCAAUCCAG_CAGCACGAAUAAGUCA .............((((.(((.....((((((...((((((..((....))..))))))..))))))....))).))))....................... (-16.00 = -16.83 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:45 2006