Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,865,291 – 14,865,382 |
Length | 91 |
Max. P | 0.976162 |
Location | 14,865,291 – 14,865,382 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 90.23 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -27.06 |
Energy contribution | -26.75 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.13 |
Mean z-score | -2.60 |
Structure conservation index | 0.84 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976162 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14865291 91 + 20766785 UGGG--CAUGUGUCACCGGGAAAAGUGAAAAACAGCUUUGGCGGGUCAACAGCAGGAGCGAUGAAAAGCCGAAGCGAAGUCG-----GAAUGCCCUUG .(((--(((((.((((........))))...)).((((((((...(((...((....))..)))...)))))))).......-----..))))))... ( -33.50) >DroSec_CAF1 37261 93 + 1 UGGGGCCAUGUGUCACCGGGAAAAGUGAAAAACAGCUUUGGCGGGUCAACAGCUGGAGCGAUAAAAAGCCGGAGCGAAGUCG-----GAAUGCCCUUG .(((((..(((.((((........))))...)))((((((((.........((....))........)))))))).......-----....))))).. ( -28.63) >DroSim_CAF1 39374 93 + 1 UGGGGCCAUGUGUCACCGGGAAAAGUGAAAAACAGCUUUGGCGGGUCAACAGCUGGAGCGAUGAAAAGCCGAAGCGAAGUCG-----GAAUGCCCUUG .(((((..(((.((((........))))...)))((((((((...(((...((....))..)))...)))))))).......-----....))))).. ( -32.50) >DroYak_CAF1 39021 98 + 1 UGGGCAUAUGUGUCACCCGGAAAAGUGAAAAACAGCUUUGGCGGGUCAACAGCAGCAGCGAUGAAAAGCCAAAGCGACGUUGAACACGAAUGUCCUUG .((((((.(((((((..((.....((.....)).((((((((...(((...((....))..)))...))))))))..)).)).))))).))))))... ( -34.50) >consensus UGGGGCCAUGUGUCACCGGGAAAAGUGAAAAACAGCUUUGGCGGGUCAACAGCAGGAGCGAUGAAAAGCCGAAGCGAAGUCG_____GAAUGCCCUUG .(((....(((.((((........))))...)))((((((((...(((...((....))..)))...)))))))).................)))... (-27.06 = -26.75 + -0.31)
Location | 14,865,291 – 14,865,382 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 90.23 |
Mean single sequence MFE | -25.42 |
Consensus MFE | -18.99 |
Energy contribution | -19.30 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.83 |
Structure conservation index | 0.75 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678229 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14865291 91 - 20766785 CAAGGGCAUUC-----CGACUUCGCUUCGGCUUUUCAUCGCUCCUGCUGUUGACCCGCCAAAGCUGUUUUUCACUUUUCCCGGUGACACAUG--CCCA ...((((((..-----.......((((.(((...(((..((....))...)))...))).))))......(((((......)))))...)))--))). ( -26.90) >DroSec_CAF1 37261 93 - 1 CAAGGGCAUUC-----CGACUUCGCUCCGGCUUUUUAUCGCUCCAGCUGUUGACCCGCCAAAGCUGUUUUUCACUUUUCCCGGUGACACAUGGCCCCA ...(((.....-----((((...(((..(((........)))..))).))))....((((....(((...(((((......))))).)))))))))). ( -21.90) >DroSim_CAF1 39374 93 - 1 CAAGGGCAUUC-----CGACUUCGCUUCGGCUUUUCAUCGCUCCAGCUGUUGACCCGCCAAAGCUGUUUUUCACUUUUCCCGGUGACACAUGGCCCCA ...((((....-----.......((((.(((...(((..((....))...)))...))).))))(((...(((((......))))).)))..)))).. ( -24.50) >DroYak_CAF1 39021 98 - 1 CAAGGACAUUCGUGUUCAACGUCGCUUUGGCUUUUCAUCGCUGCUGCUGUUGACCCGCCAAAGCUGUUUUUCACUUUUCCGGGUGACACAUAUGCCCA ...((.(((..(((.........((((((((...(((..((....))...)))...))))))))......(((((......))))))))..))).)). ( -28.40) >consensus CAAGGGCAUUC_____CGACUUCGCUUCGGCUUUUCAUCGCUCCAGCUGUUGACCCGCCAAAGCUGUUUUUCACUUUUCCCGGUGACACAUGGCCCCA ...(((.................((((.(((...(((..((....))...)))...))).))))(((...(((((......))))).)))....))). (-18.99 = -19.30 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:44 2006