| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,863,624 – 14,863,730 |
| Length | 106 |
| Max. P | 0.744673 |
| Location | 14,863,624 – 14,863,730 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 70.21 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -16.43 |
| Energy contribution | -19.57 |
| Covariance contribution | 3.14 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744673 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14863624 106 - 20766785 UCUCGUUAUUGGUAAUUCGAUUUCCACUUACUUCACCCUAUGUGGGCCGCAAA-------UUGGUUUACCCAGGGU--CGAAUGGAACAGGGUCAGCACGUGAGUGGACCCGA--AU ..............((((...(((((.....((((((((..((((((((....-------.))))))))..)))))--.))))))))..(((((..(((....))))))))))--)) ( -36.10) >DroSec_CAF1 35787 108 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNUACAUCACCCUAUGUGGGCCGCAAA-------UUGGUUUACCCAGGGCUCUGAAUGGAACAGGGUCAGCACGUGAGUGGACCCCA--AU ..............................(((((((((..((((((((....-------.))))))))..))))...)).))).....(((((..(((....))))))))..--.. ( -27.90) >DroSim_CAF1 37750 106 - 1 UCUCGUUAUUGGUAAUUCGAUUUCCACUUACAUCACCCUAUGUGGGCCGCAAA-------UUGGUUUACCCAGGGU--CGAAUGGAACAGGGUCAGCACGUGAGUGGACCCCA--AU .......((((..........(((((......(((((((..((((((((....-------.))))))))..)))))--.)).)))))..(((((..(((....))))))))))--)) ( -32.40) >DroEre_CAF1 35462 89 - 1 UCUCGUUAUUGGUAAUUCGAUUUG----UACUUCACCC------------A-A-------UUGCUUUACCCAGGGU--CGAAUAAAACAGGGUCAGCACGUGAGCGGACCCCA--AU ..(((...(((((((..(((((.(----........).------------)-)-------)))..))).))))...--)))........(((((.((......)).)))))..--.. ( -20.40) >DroYak_CAF1 37121 115 - 1 UCUCGUUAUUGGUAAUUCGAUUUGCACCUACUUCACGCUACGUGGGCCCCAAAUUGGUUUUUGGUUUACCCAGGGU--CGCAUGAAACAGGGUCAGCACGUGAGUGGACCCCAAAAU ....((.(((((....)))))..))......((((.((..(.((((..(((((......)))))....)))).)..--.)).))))...(((((..(((....))))))))...... ( -32.40) >DroAna_CAF1 39453 88 - 1 GGUCGUUAUUGGUAAUUCGAUUUGCAUUCACUUUACAUUAUGUGGGCCAAAAA-------UUGGUCUAC------------------CAGGGUCGGCACGUGAGUGCUCCCCA---- .........(((((..(((((((...(((((..........)))))....)))-------))))..)))------------------))(((..(((((....))))).))).---- ( -29.00) >consensus UCUCGUUAUUGGUAAUUCGAUUUGCACUUACUUCACCCUAUGUGGGCCGCAAA_______UUGGUUUACCCAGGGU__CGAAUGGAACAGGGUCAGCACGUGAGUGGACCCCA__AU ..................................(((((..((((((((............))))))))..))))).............(((((..(((....))))))))...... (-16.43 = -19.57 + 3.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:42 2006