Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,854,600 – 14,854,700 |
Length | 100 |
Max. P | 0.830187 |
Location | 14,854,600 – 14,854,700 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 93.65 |
Mean single sequence MFE | -35.06 |
Consensus MFE | -26.72 |
Energy contribution | -27.60 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.04 |
Mean z-score | -2.14 |
Structure conservation index | 0.76 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14854600 100 + 20766785 AUUCCCGAGCACCUCCUGCCCCCCAGUAGAAACUGAAGGGGCUGGUAUU--GUCGACAAAGGCAAGUGGCGUCGUUGGCGCUAAUUGUUUUUAAUGAAAAUU .(((.(((.((...((.(((((.((((....))))..))))).))...)--))))..((((((((.((((((.....)))))).))))))))...))).... ( -34.70) >DroSec_CAF1 26855 100 + 1 AUUCCCGAGCACCUCCUGCCCCCCAGGAGAAACUGAAGGGGCUGGUAUU--GUCGACAAAGGCAAGUGGCGUCGUUGGCGCUAAUUGUUUUUAAUGAAAAUU .(((.(((.((...((.(((((.(((......)))..))))).))...)--))))..((((((((.((((((.....)))))).))))))))...))).... ( -34.60) >DroSim_CAF1 28504 100 + 1 AUUCCCGAGCACCUCCUGCCCCCCAGGAGAAACUGAAGGGGCUGGUAUU--GUCGACAAAGGCAAGUGGCGUCGUUGGCGCUAAUUGUUUUUAAUGAAAAUU .(((.(((.((...((.(((((.(((......)))..))))).))...)--))))..((((((((.((((((.....)))))).))))))))...))).... ( -34.60) >DroEre_CAF1 26623 99 + 1 AUACCCGAGCACCUCCUGCCCCCCAGGAGAACUGA-AGGGGCUGGUGCU--GUCGACAAAGGCAAGUGGCGUCGUUGGCGCUAAUUGUUUUUAAUGAAAAUU .......((((((....(((((.(((.....))).-.))))).))))))--.(((..((((((((.((((((.....)))))).))))))))..)))..... ( -39.50) >DroYak_CAF1 27913 102 + 1 AUGCCCGAGCACCUCCUGCCCCCCAGGAGAACGUAAUGGUGCUGGUGUUGUGUCGACAAAGGCAAGUGGCGUCGUUGGCGCUAAUUGUUUUUAAUGAAAAUU ..((((.(((((((((((.....))))).........)))))))).))....(((..((((((((.((((((.....)))))).))))))))..)))..... ( -31.90) >consensus AUUCCCGAGCACCUCCUGCCCCCCAGGAGAAACUGAAGGGGCUGGUAUU__GUCGACAAAGGCAAGUGGCGUCGUUGGCGCUAAUUGUUUUUAAUGAAAAUU .....(((......((.(((((.(((......)))..))))).)).......)))..((((((((.((((((.....)))))).)))))))).......... (-26.72 = -27.60 + 0.88)
Location | 14,854,600 – 14,854,700 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 93.65 |
Mean single sequence MFE | -30.09 |
Consensus MFE | -25.40 |
Energy contribution | -26.16 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.05 |
Mean z-score | -1.52 |
Structure conservation index | 0.84 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14854600 100 - 20766785 AAUUUUCAUUAAAAACAAUUAGCGCCAACGACGCCACUUGCCUUUGUCGAC--AAUACCAGCCCCUUCAGUUUCUACUGGGGGGCAGGAGGUGCUCGGGAAU ....................((((((..(((((...........)))))..--....((.((((((.((((....)))))))))).)).))))))....... ( -31.90) >DroSec_CAF1 26855 100 - 1 AAUUUUCAUUAAAAACAAUUAGCGCCAACGACGCCACUUGCCUUUGUCGAC--AAUACCAGCCCCUUCAGUUUCUCCUGGGGGGCAGGAGGUGCUCGGGAAU ....................((((((..(((((...........)))))..--....((.((((((.(((......))))))))).)).))))))....... ( -30.10) >DroSim_CAF1 28504 100 - 1 AAUUUUCAUUAAAAACAAUUAGCGCCAACGACGCCACUUGCCUUUGUCGAC--AAUACCAGCCCCUUCAGUUUCUCCUGGGGGGCAGGAGGUGCUCGGGAAU ....................((((((..(((((...........)))))..--....((.((((((.(((......))))))))).)).))))))....... ( -30.10) >DroEre_CAF1 26623 99 - 1 AAUUUUCAUUAAAAACAAUUAGCGCCAACGACGCCACUUGCCUUUGUCGAC--AGCACCAGCCCCU-UCAGUUCUCCUGGGGGGCAGGAGGUGCUCGGGUAU ..............((....((((((..(((((...........)))))..--....((.((((((-.(((.....))))))))).)).))))))...)).. ( -30.50) >DroYak_CAF1 27913 102 - 1 AAUUUUCAUUAAAAACAAUUAGCGCCAACGACGCCACUUGCCUUUGUCGACACAACACCAGCACCAUUACGUUCUCCUGGGGGGCAGGAGGUGCUCGGGCAU .......................(((..(((((((.(((((((((((....))))..((((...............)))).))))))).)))).)))))).. ( -27.86) >consensus AAUUUUCAUUAAAAACAAUUAGCGCCAACGACGCCACUUGCCUUUGUCGAC__AAUACCAGCCCCUUCAGUUUCUCCUGGGGGGCAGGAGGUGCUCGGGAAU ....................((((((..(((((...........)))))........((.((((((.(((......))))))))).)).))))))....... (-25.40 = -26.16 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:38 2006