Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,844,119 – 14,844,209 |
Length | 90 |
Max. P | 0.902023 |
Location | 14,844,119 – 14,844,209 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 74.23 |
Mean single sequence MFE | -15.33 |
Consensus MFE | -2.32 |
Energy contribution | -2.64 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.27 |
Mean z-score | -1.87 |
Structure conservation index | 0.15 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902023 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14844119 90 + 20766785 -UAUAUGGGUUUGCAGAGGUAAACACAAAUGGCUGUUUGCUAACUAAGUAAAAU----AUAUA--------CAAACUGGUA-CAUAUGAAACCAUGUGAAACUU -..(((.((((((....((((((((........))))))))......(((....----.))).--------)))))).)))-((((((....))))))...... ( -17.80) >DroSec_CAF1 16519 80 + 1 -UAUAUGGUUUUGCAGACAUAAACACAAAUGGCUCUUUGCUAACUAAAAACCAU----AUAUA--------CAAACUGGUUUUAUAU-----------AUCCUU -(((((((((((..((.(((........)))((.....))...)).))))))))----)))..--------................-----------...... ( -13.10) >DroSim_CAF1 16626 80 + 1 -UAUAUGGUUUUGCACACAUAAACACAAAUGGCUGUUUGCUAACUAAAAACCAU----AUAUA--------CAAACUGGUUUCAUAU-----------AUCCUU -(((((((((((.......((((((........)))))).......))))))))----)))..--------................-----------...... ( -13.74) >DroEre_CAF1 16587 84 + 1 -UAUAUGCGUUUGCAGACACAAACACAAAUGGCUCUUUGCUUUCCAAGCACCAUUUGCAUAUA--------CAAACUGCUUUCACCU-----------AACGUU -((((((((((((......)))))..((((((.....((((.....)))))))))))))))))--------................-----------...... ( -17.80) >DroYak_CAF1 16947 93 + 1 UUAUAUGGUUUUGCAGGCACAAACACUAAUGGCUCUUUGCUUUCUAAGCACCAUAUGUAUGUACAUAUAUUCAAACUGGUUUCACAU-----------AUAGUU (((((((((((.(.(((((......(....)......))))).).))))((((.((((((....))))))......))))....)))-----------)))).. ( -14.20) >consensus _UAUAUGGUUUUGCAGACAUAAACACAAAUGGCUCUUUGCUAACUAAGAACCAU____AUAUA________CAAACUGGUUUCAUAU___________AUCCUU .....((((...(((((......((....))....)))))..)))).......................................................... ( -2.32 = -2.64 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:36 2006