Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,601,306 – 2,601,405 |
Length | 99 |
Max. P | 0.872463 |
Location | 2,601,306 – 2,601,405 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 71.82 |
Mean single sequence MFE | -33.42 |
Consensus MFE | -14.89 |
Energy contribution | -14.53 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.38 |
Mean z-score | -1.97 |
Structure conservation index | 0.45 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2601306 99 + 20766785 GCAGUU-----CGCAGUUG-GGCAAAGGAAAAGG--------AAAAGCUGAAACUGAAAAGCUGAAAAACUGAAGGAGCUGCAGCUCGGGCGGCGGCGCAUGCGCUCAUAAAU ((((((-----(.(((((.-(((..((....((.--------.....))....)).....)))....)))))...))))))).....(((((.((.....)))))))...... ( -26.20) >DroPse_CAF1 40757 100 + 1 GCAGAUGCGGACGCAGUUGCAGUAGUGGAAAAGUGCAG----CCAAGCCAGGCCGGGCA--------GGCAGGCAGGGCCGCCAGU-AAGCGGCGGCGCAUGCGCCCAUAAAU ((((.(((....))).))))....((((....((((.(----((..(((..(((.....--------))).)))...(((((....-..))))))))))))....)))).... ( -43.10) >DroSec_CAF1 35486 99 + 1 GCAGUU-----CGCAGUUG-GGCAAAGGAAAAGG--------AAAAGCUGAGGCUGAAAAGCUGAAAAAUUGAAGGAGCUGCAGCUCGGGCGGCGGCGCAUGCGCUCAUAAAU ((((((-----(.(((((.-..(..........)--------...))))).((((....))))............))))))).....(((((.((.....)))))))...... ( -28.00) >DroSim_CAF1 34988 91 + 1 GCAGUU-----CGCAGUUG-GGCAAAGGAAAAGG--------AAAAGCUGAGGCUGAAA--------AACUGAAGGAGCUGCAGCUCGGGCGGCGGCGCAUGCGCUCAUAAAU ((((((-----(.(((((.-(((...((......--------.....))...)))....--------)))))...))))))).....(((((.((.....)))))))...... ( -26.40) >DroYak_CAF1 33819 99 + 1 GCAGUU-----CGCAGUUG-GGCAAAGGAAAAGCUGAGGUUCAAAAGCUGAGGCUGAAA--------AGCUGAAGGAGCUGCAGAUCGGGCGGCAGCGAAUGCGCUCAUAAAU ((((((-----(((..(((-(((..((......))...))))))..))...((((....--------))))....))))))).....(((((.((.....)))))))...... ( -34.80) >DroPer_CAF1 48210 100 + 1 GCAGAUGCGGACGCAGUUGCAGUAGAGGAAAAGUGCAG----CCAAGCCAGGCCGGGCA--------GGCAGGCAGGGCCGCCAGU-AAGCGGCGGCGCAUGCGCCCAUAAAU ((....))((.((((((((((.(........).)))))----)...(((..(((.....--------))).))).(.((((((...-....)))))).).)))).))...... ( -42.00) >consensus GCAGUU_____CGCAGUUG_GGCAAAGGAAAAGG________AAAAGCUGAGGCUGAAA________AACUGAAGGAGCUGCAGCUCGGGCGGCGGCGCAUGCGCUCAUAAAU .............(((((...((.......................))...))))).....................(((((.......)))))((((....))))....... (-14.89 = -14.53 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:58 2006