Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,843,170 – 14,843,367 |
Length | 197 |
Max. P | 0.915649 |
Location | 14,843,170 – 14,843,266 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 87.68 |
Mean single sequence MFE | -23.04 |
Consensus MFE | -16.41 |
Energy contribution | -16.29 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -2.13 |
Structure conservation index | 0.71 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14843170 96 - 20766785 ACCACCACGAGCUUUUUACAUUU----AUUCCUUUUGAAAUGUGCUAAAAAGCAACAGACCAGAAGUAAUUUCUGUAAUCCCCUUGCAGCUGGUGGUGAU ..((((((.((((..(((((...----(((.((((((...((((((....))).)))...)))))).)))...))))).........)))).)))))).. ( -28.70) >DroSec_CAF1 15563 97 - 1 AC---CACGAGCUUUUUACAUUUUCGUUUUCGUUUUUAAAAGUGCUAAAAAGCAACAGACCAGAAGUAAUUUCUGUAAUCCCCUUGCAGUUGGUGGUGAU ((---(((..((((((((((((((((....))......)))))).))))))))...................((((((.....))))))...)))))... ( -21.10) >DroSim_CAF1 15666 93 - 1 AC---CACGAGCUUUUUACAUUU----AUUCCUUUUUAAAAGUGCUAAAAAGCAACAGACCAGAAGUAAUUUCUGUAAUCCCCUUGCAGCUGGUGGUGAU ((---(((..(((((((((((((----............))))).))))))))..(((....(((....)))((((((.....))))))))))))))... ( -22.20) >DroEre_CAF1 15647 92 - 1 AC---ACAGAGCUCUUUGCAUUU----AUUCCAUUUUA-AAGUGCCAAAAGGCAACAGACCAGAAGUAAUUUCUGUAAUCUCCUUGCAGCUGGUGGUGAU .(---((...((..(((((((((----...........-))))).))))..)).....(((((.........((((((.....))))))))))).))).. ( -20.30) >DroYak_CAF1 15965 93 - 1 AC---ACAAAGCUUUUUGCAUUU----AAUCCAUUUUAAAAGUGCUAAAAAGCAACAGAGCAGAAGUAAUUCCUGUAAUCCCAUUGCAGCUGGUGGUGAU .(---((...(((((((((((((----............)))))).)))))))..(((....(((....)))(((((((...)))))))))))))..... ( -22.90) >consensus AC___CACGAGCUUUUUACAUUU____AUUCCUUUUUAAAAGUGCUAAAAAGCAACAGACCAGAAGUAAUUUCUGUAAUCCCCUUGCAGCUGGUGGUGAU ..........(((((((((((((................))))).)))))))).((..(((((.........((((((.....))))))))))).))... (-16.41 = -16.29 + -0.12)
Location | 14,843,266 – 14,843,367 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -24.46 |
Consensus MFE | -13.80 |
Energy contribution | -15.32 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.21 |
Mean z-score | -2.27 |
Structure conservation index | 0.56 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915649 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14843266 101 + 20766785 AAUCUCUGCCAAUUUGUUUCUUUAAAGCCAGGCUAACAUAUAAACAGAGU--GUCUAUUUUAAAUGAAAUGCAAAUGGCAUAGAA-ACUAGUGCUUCUG--------GAAUU- ..(((.(((((.(((((((((((((((..((((.................--)))).))))))).)))..)))))))))).))).-.((((.....)))--------)....- ( -21.83) >DroSec_CAF1 15660 106 + 1 AAUCUCUGCCAAUUUGUUUCUUUAAAGCCAGGCUAACAUA-AAACAGAGU--GUCUGUUUUAAAUGA-AUGCAAAUGGCAUAGAA-ACUAGUGCUUCUGU-GCACUUGAAUC- ..(((.(((((.((((((((((((((((.((((.......-.........--)))))))))))).))-).)))))))))).))).-.(.(((((......-))))).)....- ( -30.69) >DroSim_CAF1 15759 106 + 1 AAUCUCUGCCAAUUUGUUUCUUUAAAGCCAGGCUAACAUA-AAACAGAGU--GUCUGUUUUAAAUGA-AUGCAAAUGGCAUAGAA-ACUAGUGCUUCUGU-GCACUUGGAUC- ..(((.(((((.((((((((((((((((.((((.......-.........--)))))))))))).))-).)))))))))).))).-.(((((((......-)))).)))...- ( -31.09) >DroEre_CAF1 15739 96 + 1 AAUCUCUGCCAAUUUGUUCCUGUGAAGCCAGACUAACAUA-UAACCGAGUGUGUCUGCAUUAAAUGA-AUACAAAUGGCAUAGAAAACUAGUGC--------------UAUC- ..(((.(((((.(((((((...(((.((.((((..((((.-.......)))))))))).)))...))-..)))))))))).)))..........--------------....- ( -21.60) >DroYak_CAF1 16058 102 + 1 AAUCUCUGUCAAUUU------UUGAAGCCACACUAGCAUU-UGACCAAGU--GUCUGUAUUAAAUGA-AUACAAACGGCUUAGAA-ACUAGUUAUUCUGUAGCACUUGUAUCU .......(((((...------.((.((.....))..)).)-))))(((((--((.((((((.....)-))))).)).((((((((-........))))).))))))))..... ( -17.10) >consensus AAUCUCUGCCAAUUUGUUUCUUUAAAGCCAGGCUAACAUA_AAACAGAGU__GUCUGUUUUAAAUGA_AUGCAAAUGGCAUAGAA_ACUAGUGCUUCUGU_GCACUUGAAUC_ ..(((.(((((.(((((.((((((((((.((((..((...........))..)))))))))))).))...)))))))))).)))............................. (-13.80 = -15.32 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:35 2006