Locus 4537

Sequence ID 2R_DroMel_CAF1
Location 14,834,965 – 14,835,059
Length 94
Max. P 0.851800
window7274

overview

Window 4

Location 14,834,965 – 14,835,059
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 82.36
Mean single sequence MFE -23.89
Consensus MFE -19.28
Energy contribution -19.56
Covariance contribution 0.28
Combinations/Pair 1.26
Mean z-score -1.86
Structure conservation index 0.81
SVM decision value 0.79
SVM RNA-class probability 0.851800
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14834965 94 - 20766785
AGGGGUUACAUUAGGCCCUAUUAUCCAUGAGCCAGGUACAAUUCUGGUCAAUAAUCCUUGGCCAGUUA--ACCGAAGGCAAAACAUAAAUUUGCAG
.((((((......))))))...........(((.(((......((((((((......))))))))...--)))...)))................. ( -25.30)
>DroSec_CAF1 7401 87 - 1
AGGGGUUACAUUAGGCCCUAUUA-------GCCAAGUACAAUUCUGGUCAAUAAUCCUUGGCCAGUUA--ACCGAAGGCAAAACAUAAAUUUGCGG
.((((((......))))))....-------(((..........((((((((......))))))))...--......)))................. ( -22.31)
>DroSim_CAF1 7507 87 - 1
AGGGGUUACAUUAGGCCCUAUUA-------GCCAAGUACAAUUCUGGUCAAUAAUCCUUGGCCAGUUA--ACCGAAGGCAAAACAUAAAUUUGCGG
.((((((......))))))....-------(((..........((((((((......))))))))...--......)))................. ( -22.31)
>DroEre_CAF1 7460 96 - 1
AUGGGUAAUAUUAGGUUCAAUUAUCUAAAAGCCGGGGAAAAUUCUGGCCAAAAGUCCUUGGCCAGUUUUUGCCUUCGGUUAAACAUAAAUUUCAGG
.((((((((..........))))))))..((((((((.(((..((((((((......))))))))..)))..))))))))................ ( -30.00)
>DroYak_CAF1 7641 94 - 1
AGGGGUAACAUUAGGCGCUAUUAUCUAAAAGCCAGGCAAAAUUCUGGUCAAUAGUCCUUGGCCAGUUA--AACGAAGGCAAAACAUAAAUUUGCGG
..(..((((....(((..............)))...........(((((((......)))))))))))--..)....(((((.......))))).. ( -19.54)
>consensus
AGGGGUUACAUUAGGCCCUAUUAUC_A__AGCCAGGUACAAUUCUGGUCAAUAAUCCUUGGCCAGUUA__ACCGAAGGCAAAACAUAAAUUUGCGG
.(((((........)))))...........(((.(((......((((((((......)))))))).....)))...)))................. (-19.28 = -19.56 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:32 2006