Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,829,840 – 14,829,943 |
Length | 103 |
Max. P | 0.802641 |
Location | 14,829,840 – 14,829,943 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.21 |
Mean single sequence MFE | -30.36 |
Consensus MFE | -23.19 |
Energy contribution | -25.11 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.10 |
Mean z-score | -1.89 |
Structure conservation index | 0.76 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14829840 103 + 20766785 GCUGCAUAAUAAUGGGUGUUUCGAAAGCACCUAAGUCCAUUAGAGAAUCAAUUUGUUUAAAGUG----------------CACUAUGAAAAGCACUUGCCUUUUAUGCAAAUAGAUAGA- ..(((((((...((((((((.....)))))))).......((((.((.....)).))))(((((----------------(..........)))))).....)))))))..........- ( -22.40) >DroSec_CAF1 2385 117 + 1 GCUGCAUA---AUGGGUGUUUCGAAAGCACCUAAGUCCAUUAGAGAAUCAAUUUGUUUAAAGUGCGUGUGCAUGUGAGGGCACUAUGAAAAGCACUUGCAUUUUAUGCAAAUAUAUAGAA .(((....---.((((((((.....)))))))).................((((((.(((((((((.((((..(((....)))..(....))))).))))))))).))))))...))).. ( -30.50) >DroSim_CAF1 2413 117 + 1 GCUGCAUA---AUGGGUGUUUCGAAAGCACCUAAGUCCAUUAGAGAACCAAUUUGUUUAAAGUGCGUGUGCAUGUGAGGGCACUAUGAAAAGCACUUGCAUUUUAUGCAAAUAUAUAGAA .(((....---.((((((((.....)))))))).................((((((.(((((((((.((((..(((....)))..(....))))).))))))))).))))))...))).. ( -30.50) >DroEre_CAF1 2414 117 + 1 GCUGCAUA---AUGGGUGUUCCGAAAGCACCUAAGUCCAUUAAGGAAUCAAUUUGUUUUAAGUGCGUGUGCAUGUGAUCGCACUAUGCAAAGCACUUGCACUUUAUGCAAAUAGAUGGAU ..((((((---(((((((((.....))))))))..(((.....)))............(((((((...((((((((....))).)))))..)))))))....)))))))........... ( -35.80) >DroYak_CAF1 2458 117 + 1 CCUGCAUA---AUGGGUGUUUCGAAAGCACCUAAGUCCAUUAGAGAAUCAAUUUGUUUCAAGUGCGUGUGCAUGUGAUCGCACUAUGAGGAGUACCUGCACUUUAUGCAAAUAGGUAGAU .((((...---.((((((((.....)))))))).................((((((...((((((..((((........))))....(((....)))))))))...))))))..)))).. ( -32.60) >consensus GCUGCAUA___AUGGGUGUUUCGAAAGCACCUAAGUCCAUUAGAGAAUCAAUUUGUUUAAAGUGCGUGUGCAUGUGAGCGCACUAUGAAAAGCACUUGCAUUUUAUGCAAAUAGAUAGAA ............((((((((.....)))))))).............(((.((((((.(((((((((.((((....................)))).))))))))).)))))).))).... (-23.19 = -25.11 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:27 2006