Locus 4531

Sequence ID 2R_DroMel_CAF1
Location 14,822,856 – 14,822,976
Length 120
Max. P 0.565459
window7267

overview

Window 7

Location 14,822,856 – 14,822,976
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.17
Mean single sequence MFE -35.14
Consensus MFE -29.74
Energy contribution -29.62
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -1.32
Structure conservation index 0.85
SVM decision value 0.06
SVM RNA-class probability 0.565459
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14822856 120 + 20766785
UAUAACUUGACGGUUUUUCAGGCAGCCAGAAUGCAUAUUUGAUUACAGCGUGAUCUGUGCAACGGAGUAGCGUAGCUCUUUGGGCAUGGAUCUGGGUUUGAUUAUUACCGAAGGCUAAUC
.....(((..((((...((((((..(((((((((.............))))..(((((((..(((((.(((...)))))))).)))))))))))))))))).....)))).)))...... ( -32.52)
>DroSec_CAF1 24781 120 + 1
UAUAACUUGACGGUUAUUCAGGCAGCCAGAAUGCAUAUUUGAUUACUGCGUGAUCUGUGCAACGGAGUAGCGUAGCUCUUUGGGCAAGGAUCUGGGUUUGAUUAUCACCGAAGGCUAAUC
............(((((((..(((..(((((((((((......)).)))))..)))))))....))))))).((((.((((((.....((((.......))))....))))))))))... ( -32.60)
>DroSim_CAF1 18993 120 + 1
UAUAACUUGACGGUUAUUCAGGCAGCCAGAAUGCGUAUUUGAUUACUGCGUGAUCUGUGCAACGGAGUAGCGUAGCUUUUUGGGCAAGGAUCAGGUUAUGAUUAUCACCGAAGGCUAAUC
............(((((((..(((..((((.((((((.........)))))).)))))))....))))))).((((((((.((.....(((((.....)))))....))))))))))... ( -32.90)
>DroEre_CAF1 17649 120 + 1
UAUAACUUGACGGUUAUUCAGGCAGCCAGAAUGCAUAUUUGAUUACUGUGUGAUCUGUGCAACUGAGUAGCGUAGCUCUUUGGGCAAGGAUCUGGGUUUGAUUAUCACCGAAGGCUAAAC
............(((((((((...((((((.((((((.........)))))).)))).))..))))))))).((((.((((((.....((((.......))))....))))))))))... ( -37.20)
>DroYak_CAF1 18838 120 + 1
UAUAACUUGACGGUUAUUCAGGCAGCCAGAAUGCAUAUUUGAUUAGUGUGUGAUCUGUGCAACUGAGUAGCGUAGCUCUUUGGGCAAGGAUCUGGGUUUGAUUAUCACCGAAGGCUAAAC
............(((((((((...((((((.((((((((.....)))))))).)))).))..))))))))).((((.((((((.....((((.......))))....))))))))))... ( -40.50)
>consensus
UAUAACUUGACGGUUAUUCAGGCAGCCAGAAUGCAUAUUUGAUUACUGCGUGAUCUGUGCAACGGAGUAGCGUAGCUCUUUGGGCAAGGAUCUGGGUUUGAUUAUCACCGAAGGCUAAUC
............(((((((.(...(((((((((((((......)).)))))..)))).))..).))))))).((((.((((((.....((((.......))))....))))))))))... (-29.74 = -29.62 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:25 2006