Locus 4530

Sequence ID 2R_DroMel_CAF1
Location 14,822,398 – 14,822,514
Length 116
Max. P 0.934802
window7266

overview

Window 6

Location 14,822,398 – 14,822,514
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 95.86
Mean single sequence MFE -17.74
Consensus MFE -16.55
Energy contribution -16.27
Covariance contribution -0.28
Combinations/Pair 1.11
Mean z-score -1.43
Structure conservation index 0.93
SVM decision value 1.24
SVM RNA-class probability 0.934802
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14822398 116 - 20766785
UUUGAAACACCAAGGCGCUUGAUAGCUAAAAAAUAACAGAUAAAUAUUGUUGAAAACGUACAAUACAAUAAUUAAAAAGUAAACAACGAUGAUUUUUAGGUUUUCAGCAAACAAAC
((((.........(((........)))...................((((((((((((((...))).....(((((((..............)))))))))))))))))).)))). ( -16.34)
>DroSec_CAF1 24313 116 - 1
UCUGAAACACCAAGGCGCUUGAUAGCUAAAAAUUAACAGAUAAAUAUUGUUGAAAACGUACCAUACAAUAAUUAAAAAGUAAACAACGAUGAUUUUUAGGUUUUCAGCAAAGAAAC
.((((((.(((.....(((....)))(((((((((.(...(((.((((((((.........)).)))))).)))....((.....))).))))))))))))))))))......... ( -18.00)
>DroSim_CAF1 18524 116 - 1
UCUGAAACACCAAGGCGCUUGAUAGCUAAAAAUUAACAGAUAAAUUUUGUUGAAAACGUACAAUACAAUAAUUAAAAAGUAAACAACGAUGAUUUUUAGGUUUUCAGCAAAGAAAC
((((.........(((........))).........))))....((((((((((((((((...))).....(((((((..............)))))))))))))))))))).... ( -19.31)
>DroEre_CAF1 17176 116 - 1
UCUAAAACACCAAGGCGCUUGAUAGUUAAAAAUUAACAGAAUAAUAUUGUUGAAAACGUACAAUACAAUAAUUAAAAAGUAAACAACGAUCAUUUUUAGGUUUUCAGCAAACAAAC
(((.......((((...))))...((((.....)))))))......((((((((((((((...))).....(((((((..............))))))))))))))))))...... ( -15.34)
>DroYak_CAF1 18368 116 - 1
UCUGAAACACCAAGGCGCUUGAUAGCUAAAAAUUAACAGAAAAAUAUUGUUGAAGACGUACAAUACAAUAAUUAAAAAGUAAACAACGAUGAUUUUUAGGUUUUCAGCAAAGAAAC
.((((((.(((..(((........)))...........(((((.((((((((...((.....................))...)))))))).))))).)))))))))......... ( -19.70)
>consensus
UCUGAAACACCAAGGCGCUUGAUAGCUAAAAAUUAACAGAUAAAUAUUGUUGAAAACGUACAAUACAAUAAUUAAAAAGUAAACAACGAUGAUUUUUAGGUUUUCAGCAAAGAAAC
((((.........(((........))).........))))......((((((((((((((...))).....(((((((..............))))))))))))))))))...... (-16.55 = -16.27 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:24 2006