Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,820,521 – 14,820,638 |
Length | 117 |
Max. P | 0.810085 |
Location | 14,820,521 – 14,820,638 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 97.01 |
Mean single sequence MFE | -41.76 |
Consensus MFE | -39.40 |
Energy contribution | -38.92 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.07 |
Mean z-score | -1.29 |
Structure conservation index | 0.94 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810085 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14820521 117 - 20766785 GUACACCUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGCUCGGGGGUGCCGUACAGCAGUAUUCCCUUGAAGCCAAUACUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC ......(((((..(((((..(((((((((((..........)))))))))))..)))))..))))).........................((((((.((....)).)))))).... ( -43.50) >DroSec_CAF1 22450 117 - 1 GUACACCUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGCUCUGGGGUGCCGUACAGCAGUAUUCCCUUGAAUCCAAUACUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC ......(((((..(((((.((((..((((((..........))))).)..)))))))))..))))).........................((((((.((....)).)))))).... ( -41.90) >DroSim_CAF1 16660 117 - 1 GUACACCUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGCUCGGGGGUGCCGUACAGCAGUAUUCCCUUGAAUCCAAUACUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC ......(((((..(((((..(((((((((((..........)))))))))))..)))))..))))).........................((((((.((....)).)))))).... ( -43.50) >DroEre_CAF1 15310 117 - 1 GUACACUUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGUUCCGGGGUGCCGUACAGCAGUAUCCCCUUGAAUCCAAUACUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC ....(((.(((..(((((.((((((((((((..........)))).)))))))))))))..))))))........................((((((.((....)).)))))).... ( -38.90) >DroYak_CAF1 16495 117 - 1 GUACACUUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGUUCCGGGGUGCCGUACAGCAGUAUACCCUUGAAUCCAAUGCUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC (((.(((.(((..(((((.((((((((((((..........)))).)))))))))))))..)))))).)))....................((((((.((....)).)))))).... ( -41.00) >consensus GUACACCUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGCUCCGGGGUGCCGUACAGCAGUAUUCCCUUGAAUCCAAUACUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC ......(((((..(((((..((..(((((((..........)))))))..))..)))))..))))).........................((((((.((....)).)))))).... (-39.40 = -38.92 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:20 2006