Locus 4526

Sequence ID 2R_DroMel_CAF1
Location 14,819,526 – 14,819,634
Length 108
Max. P 0.643364
window7261

overview

Window 1

Location 14,819,526 – 14,819,634
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 69.64
Mean single sequence MFE -22.87
Consensus MFE -5.07
Energy contribution -6.47
Covariance contribution 1.40
Combinations/Pair 1.17
Mean z-score -1.82
Structure conservation index 0.22
SVM decision value 0.23
SVM RNA-class probability 0.643364
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14819526 108 + 20766785
AGUUGGG--GGCAGUUAGUAUUUAUCAACAGCGGUAAAUUAUUAACUAUUUGCAAUAU----------ACAGCAGGAUUGAUAAUAAUAUUACUCCAAAACCAUUUCUUUAAUCUUCUUC
..(((((--(..((((((((((((((......)))))).)))))))).(((((.....----------...)))))................))))))...................... ( -20.40)
>DroSec_CAF1 21432 108 + 1
AGUUGGG--GGGAGUAAGUAUUUAUCAACAGUGGUAAAUGAAGAACUAUUUGCAAUAU----------ACAGCAGAAUAGAUAAUAUUAUUAUUCCGAAACCAUUUCUUUAAUCUUCCGA
..(((((--((((((((.(((((((((....))))))))).....((((((((.....----------...)))).)))).........)))))))(((.....))).......)))))) ( -21.60)
>DroSim_CAF1 15666 110 + 1
AGUUGGGGGGGGAGUAAGUAUUUAUCAACAAAGGUAAAUGAAUAAUUAAUUUCAAUAU----------ACAGCAGGAUAGAUAAUAUUAUUACUCCGAAACCAUUUCUUUAAUCUUCCGA
..(((((((((((((((.((((((((.......(((..((((........))))...)----------)).....))))))))......)))))))(((.....))).....)))))))) ( -25.10)
>DroEre_CAF1 14334 112 + 1
UGUUGGU--G-GUGUAAGUAUUCAUCA-CAGUUGUAAAUAAAUAACUAUUUGCAAUAUAAUAACAAA--CAGCAGGAUAGAUAGAACCAUUGAUCAAAAUCUUUAUCUUUUAUCAUAU--
(((((((--(-(((........)))))-).((((((((((......))))))))))...........--))))).((((((.(((......(((....)))....)))))))))....-- ( -24.00)
>DroYak_CAF1 15609 104 + 1
UGUUGGC--GGGAGUAAGUAUUCAUCAAGAGUUGUAAAUAAAGAACUAUUUGCAACAUUAUCACAAAUACAGCAGGAUACAG---------CAUCAACAGAUUGA---UUUAUCCUGU--
.....((--....))..(((((........((((((((((......)))))))))).........))))).((((((((...---------.(((((....))))---).))))))))-- ( -23.23)
>consensus
AGUUGGG__GGGAGUAAGUAUUUAUCAACAGUGGUAAAUAAAUAACUAUUUGCAAUAU__________ACAGCAGGAUAGAUAAUAUUAUUAAUCCAAAACCAUUUCUUUAAUCUUCU__
.((((......((((....))))..........(((((((......)))))))................))))((((((((...........................)))))))).... ( -5.07 =  -6.47 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:18 2006