Locus 4524

Sequence ID 2R_DroMel_CAF1
Location 14,817,634 – 14,817,754
Length 120
Max. P 0.749114
window7257

overview

Window 7

Location 14,817,634 – 14,817,754
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.33
Mean single sequence MFE -27.50
Consensus MFE -25.42
Energy contribution -25.82
Covariance contribution 0.40
Combinations/Pair 1.07
Mean z-score -1.30
Structure conservation index 0.92
SVM decision value 0.47
SVM RNA-class probability 0.749114
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14817634 120 - 20766785
CAAUCAUCCUUACCAUUUAAGCAGUCAAGCAGCCGAUUACAGUCCUCAGUCAGUUGCUUGAUAUCUCUAUCCAGUCUUUCAGAUUCCCCCACCGGCACCGGCUCAGUCAGGAUGUUGAUC
(((.((((((.((..........((((((((((.((((.........)))).)))))))))).............................(((....)))....)).)))))))))... ( -30.20)
>DroSec_CAF1 19518 120 - 1
CAAUCAUCCUUACCAUUUAAGCAGUCAAGCAGCCGAUUACAGUCCUCAGUCAGUUGCUUGAUAUCUCUAUCCAGUCUUUCAGAUUCCCCCACCGGCACCGGCUCAGUCAGGAUGUUGAUC
(((.((((((.((..........((((((((((.((((.........)))).)))))))))).............................(((....)))....)).)))))))))... ( -30.20)
>DroSim_CAF1 13754 120 - 1
CAAUCAUCCUUACCAUUUAAGCAGUCAAGCAGCCGAUUACAGUCCUCAGUCAGUUGCUUGAUAUCUCUAUCCAGUCUUUCAGAUUCCCCCACCGGCACCGGCUCAGUCAGGAUGUUGAUC
(((.((((((.((..........((((((((((.((((.........)))).)))))))))).............................(((....)))....)).)))))))))... ( -30.20)
>DroEre_CAF1 12455 120 - 1
CAAUCAUUUUUACCAUUUAAGCAGUCAAGCAGACGCUUACAGUCCUCAGUCAGUUGCUUGAUAUCUCUAUCCAGUCUUUCAGAUUCCCCCACCGGCACCGGCUCAGUCAGGAUGUUGAUC
.......................((((((((...(((.((........)).)))))))))))(((..(((((((((.....))))......(((....)))........)))))..))). ( -23.50)
>DroYak_CAF1 13692 120 - 1
GAAUCAUUCUUACCAUUUAAGCAGUCAAGCAGCCGCUUGCAGUCCUCAGUCAGUUGCUUGAUAUCUCUAUCCAGUCUUUCAGUUUCCCCCACCGGCACCGGCUCAGUCAGGAUGUUGAUC
....((((((.((..........((((((((((.(.(((.......))).).)))))))))).............................(((....)))....)).))))))...... ( -23.40)
>consensus
CAAUCAUCCUUACCAUUUAAGCAGUCAAGCAGCCGAUUACAGUCCUCAGUCAGUUGCUUGAUAUCUCUAUCCAGUCUUUCAGAUUCCCCCACCGGCACCGGCUCAGUCAGGAUGUUGAUC
(((.((((((.((..........((((((((((.((((.........)))).)))))))))).............................(((....)))....)).)))))))))... (-25.42 = -25.82 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:14 2006