| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,817,278 – 14,817,398 |
| Length | 120 |
| Max. P | 0.979102 |
| Location | 14,817,278 – 14,817,398 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.00 |
| Mean single sequence MFE | -30.64 |
| Consensus MFE | -25.40 |
| Energy contribution | -25.36 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14817278 120 + 20766785 AUCUAUUUAAAUAUAAAUUCUGUUUAUGAACCCCUUUCACUCUGCGGCAGACAGGCGUUUGGUGGGGUAAAUAUUUUUAGCAACAAAACAGAGUAAUAAAAUGGGAGGCGUUAGACAGAA .................(((((((((...((.(((..(((((((((.(((((....))))).)).(.((((....)))).).......))))))........)..))).))))))))))) ( -28.40) >DroSec_CAF1 19165 120 + 1 AUCUAUUUAAAUAUAAAUUCUGUUUAUGAACCCCUCUCGCUCUGCGGCAGCCAGGCGGUUGGUGGGGUAAUUAUUUUUAGCAACAAAACAGAGUAAUAAAAUGAGAGGCGUUAGACAGAA .................(((((((((...((.((((((((((((((.(((((....))))).)).(.(((......))).).......))))))........)))))).))))))))))) ( -33.70) >DroSim_CAF1 13401 120 + 1 AUCUAUUUAAAUAUAAAUUCUGUUUAUGAACCCCUCUCGCUCUGCGGCAGCCAAGCGGUUGGUGGGGUAAUUAUUUUUAGCAACAAAACAGAGUAAUAAAAUGAGAGGCGUUAGACAGAA .................(((((((((...((.((((((((((((((.(((((....))))).)).(.(((......))).).......))))))........)))))).))))))))))) ( -33.70) >DroEre_CAF1 12104 120 + 1 AUCUAUUUAAAUAUAAAUUCUGUUUAUGAACCCCUCUUAAAUUGCGGUAGCCAAGCGGGAGGUGGGGUAAUUAUUUUUAGCAACAAAACAGAGUAAUAAAAUGAGAGGCGUUAGACAGAA .................(((((((((...((.(((((((.(((((((...))..((..(((((((.....)))))))..))...........)))))....))))))).))))))))))) ( -26.00) >DroYak_CAF1 13336 119 + 1 AUCUAUUUAAAUAUAAAUUCUGUUUAUGAACCUCUCGCUAUCUGUGGUAGCCAAGCGGGUGGUGGGGUAAUUAUUUUUAGCAACA-AACAGAGUAAUAAAAUGAGAGGCGUUAGACAGAA .................(((((((((....((((((((((...(((((.(((..((.....))..))).)))))...)))).((.-......))........))))))...))))))))) ( -31.40) >consensus AUCUAUUUAAAUAUAAAUUCUGUUUAUGAACCCCUCUCACUCUGCGGCAGCCAAGCGGUUGGUGGGGUAAUUAUUUUUAGCAACAAAACAGAGUAAUAAAAUGAGAGGCGUUAGACAGAA .................(((((((((...((.((((((((((((((.(((((....))))).)).(.(((......))).).......))))))........)))))).))))))))))) (-25.40 = -25.36 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:13 2006