Locus 4519

Sequence ID 2R_DroMel_CAF1
Location 14,814,035 – 14,814,155
Length 120
Max. P 0.729657
window7244

overview

Window 4

Location 14,814,035 – 14,814,155
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.00
Mean single sequence MFE -33.42
Consensus MFE -30.72
Energy contribution -30.72
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.92
SVM decision value 0.42
SVM RNA-class probability 0.729657
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14814035 120 + 20766785
UCCAGCUGUGACAAAUGAUGGCCUAAAAUGGCGGCUACACCACCAAUGCCGCCCGGAUCAAACACCCAUCAAUUGAAUGGCAAAACAGUCGGCAAGGGGAACCCCCUAGCUGAGGCGAUC
.((.(((((..(((.((((((........((((((............)))))).(.......)..)))))).))).))))).......(((((.(((((...))))).)))))))..... ( -41.60)
>DroSec_CAF1 15876 120 + 1
UCCAGCUGUGACAAAUGAUGGCCUAAAAUGGCGGCUACACCACCAAUGCCGCCCGGAUCAAACACCCACCAAUUGAAUGGCAAAACAGUCGGCAAGGGCAACCCCCUAACUGAGGCGAUC
.((.(((((..(((.((.(((........((((((............)))))).(.......)..))).)).))).)))))....((((..(...((....))..)..)))).))..... ( -31.40)
>DroSim_CAF1 10155 120 + 1
UCCAGCUGUGACAAAUGAUGGCCUAAAAUGGCGGCUACACCACCAAUGCCGCCCGGAUCAAACACCCACCAAUUGAAUGGCAAAACAGUCGGCAAGGGCAACCCCCUAACUGAGGCGAUC
.((.(((((..(((.((.(((........((((((............)))))).(.......)..))).)).))).)))))....((((..(...((....))..)..)))).))..... ( -31.40)
>DroEre_CAF1 8765 120 + 1
UCCAGCUGUGACAAAUGAUGGCCUAAAAUGGCGGCUACACCACCAAUGCCGCCCGGAUCAAACACCCACCAAUUGAAUGGCAAAGCAGUCGGCAAGGGCAACCCCCUAACUGAGGCGAUC
....(((((..(((.((.(((........((((((............)))))).(.......)..))).)).))).)))))...((..((((..((((.....))))..)))).)).... ( -32.40)
>DroYak_CAF1 10029 120 + 1
UCCAGCUGUGACAAAUGAUGGCCUAAAAUGGCGGCUACACCACCAAUGCCGCCCGGAUCAAACACCCACCAAUUGAAUGGCAAAAAAGUCGGCAAGGGCAAUCCCCUAACUGAGGCGAUC
.((.(((((..(((.((.(((........((((((............)))))).(.......)..))).)).))).))))).......((((..((((.....))))..))))))..... ( -30.30)
>consensus
UCCAGCUGUGACAAAUGAUGGCCUAAAAUGGCGGCUACACCACCAAUGCCGCCCGGAUCAAACACCCACCAAUUGAAUGGCAAAACAGUCGGCAAGGGCAACCCCCUAACUGAGGCGAUC
.((.(((((..(((.((.(((........((((((............)))))).(.......)..))).)).))).))))).......((((..((((.....))))..))))))..... (-30.72 = -30.72 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:02 2006