Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,812,408 – 14,812,528 |
Length | 120 |
Max. P | 0.564000 |
Location | 14,812,408 – 14,812,528 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.92 |
Mean single sequence MFE | -21.18 |
Consensus MFE | -18.89 |
Energy contribution | -19.13 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.20 |
Structure conservation index | 0.89 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14812408 120 - 20766785 AAAAAAAUCAAGGCACAAAAUUAAUGAUAUGCUUGCUAAGGUGAAAGAGUUGAAGACGCAGGAAAUUAAUAUUAAAAAGCGAAAACCCAUCAAAUGGGAUAAGCAUUUAAUUGCUGUCCA ...........((.(((.((((((....(((((((.....................(((...................)))....(((((...))))).)))))))))))))..))))). ( -19.71) >DroSec_CAF1 14243 120 - 1 GAAAGAAUCAAGGCACAAAAUUAAUGAUAUGCUUGCUAAGGUGAAAGAGUUGAACACGCAGGAAAUUAAUAUUAAAAAGCGAAAACCCAUCAAGUGGGAUAAGCAUUUAAUUGCUGUCCA ...........((.(((.((((((((((((.(((((....(((...........))))))))......))))))....((.....(((((...)))))....))..))))))..))))). ( -20.80) >DroSim_CAF1 8511 120 - 1 AAAAGAAUCAAGGCACAAAAUUAAUGAUAUGCUUGCUAAGGUGAAAGAGUUGAAGGCGCAGGAAAUUAAUAUUAAAAAGCGAAAACCCAUAAAGUGGGAUAAGCAUUUAAUUGCUGUCCA ...........((.(((.((((((....(((((((.....................(((...................)))....(((((...))))).)))))))))))))..))))). ( -19.71) >DroEre_CAF1 7100 120 - 1 AAAAGAAUCAAGGCACAAAAUUAAUGAUAUGCUAGCUAAGGUGAAAGAGUUGAAGACGCAGCAAAUUAAUAUUAAAAAGCGAAAACCCAUCAAGUGGGAUAAGCAUUUAAUUGCUGUCCA ...........((.(((.((((((....(((((.(((....(....).((((......))))...............))).....(((((...)))))...)))))))))))..))))). ( -20.60) >DroYak_CAF1 8404 120 - 1 AAAAGGAUGAAGGCACAAAAUUAAUGAUAUGCUGGCUAAGGUGAAAGAGUUGAAGACGCAGCAAAUUCAUAUUAAAAAGCGAAAACCCAUCAAGUGGGAUAAGCAUUUAAUUGCUGUCCA ....((((...((((....(((((....(((((.(((...(((((...((((......))))...))))).......))).....(((((...)))))...)))))))))))))))))). ( -25.10) >consensus AAAAGAAUCAAGGCACAAAAUUAAUGAUAUGCUUGCUAAGGUGAAAGAGUUGAAGACGCAGGAAAUUAAUAUUAAAAAGCGAAAACCCAUCAAGUGGGAUAAGCAUUUAAUUGCUGUCCA ...........((.(((.((((((....(((((((.....................(((...................)))....(((((...))))).)))))))))))))..))))). (-18.89 = -19.13 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:52 2006