Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,811,757 – 14,811,858 |
Length | 101 |
Max. P | 0.500000 |
Location | 14,811,757 – 14,811,858 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 82.90 |
Mean single sequence MFE | -27.22 |
Consensus MFE | -16.82 |
Energy contribution | -16.18 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.14 |
Mean z-score | -1.75 |
Structure conservation index | 0.62 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14811757 101 + 20766785 AGCGAGG---GGGAAAACCGAAAGGCAGAC------GAAGCUGGCAAACAAAACGUAGCAAUCUAAAGAGCACAGAAAACGAAUUUUCAUUGCCUUCCCAUCGACCCCUU--------- ...((((---((.....((....))....(------((.(..(((((.......((.((..((....)))))).(((((....))))).)))))....).))).))))))--------- ( -25.40) >DroSec_CAF1 13561 107 + 1 AGUGGGGGAGGGGAAAAACGAAAGGCAGAC------GAAGCUGCCAAACAAAACGUAGCAAUCUAAAAAGCACAGAAAACGACUUUUCAUUGCCUUCCCAUCGACCCCUUCCC------ ....(((((((((........(((((((..------...(((((..........)))))...............(((((....))))).)))))))........)))))))))------ ( -32.99) >DroSim_CAF1 7815 106 + 1 AGUGGGGGAGGGGAA-AACGAAAGGCAGAC------GAAGCUGGCAAACAAAACGUAGCAAUCUAAAGAGCACAGAAAACGAAUUUUCAUUGCCUUCCCAUCGACCCCUUCUC------ ....(((((((((..-..(....).....(------((.(..(((((.......((.((..((....)))))).(((((....))))).)))))....).))).)))))))))------ ( -28.10) >DroEre_CAF1 6407 111 + 1 AGA-------GGGAAAA-UGAGAGGCAAACAAGGGGGAAGCUGGCAAACAAAACGUAGCAAUCUUAAGAGCACAGAAAACGAAUUUUCAUUGCCUUGCCAUCGACCCCUCGGCAACCCC .((-------(((....-(((..(((((......((....))(((((.......((.((..((....)))))).(((((....))))).)))))))))).)))..)))))(....)... ( -26.70) >DroYak_CAF1 7722 102 + 1 AGU-------GGGAAAACUGAGAGGCAGAC------GUAGCUGGCAAACAAAACGUAGCAAUCUUAAGAGCAAAGAAAAUGAAUUUUCAUUGCCUUCCCAUCGACCCCUUCGCGA---- .((-------(((((...(((((.((..((------((...((.....))..)))).))..)))))...((((.(((((....))))).)))).)))))))..............---- ( -22.90) >consensus AGUG_GG___GGGAAAAACGAAAGGCAGAC______GAAGCUGGCAAACAAAACGUAGCAAUCUAAAGAGCACAGAAAACGAAUUUUCAUUGCCUUCCCAUCGACCCCUUCGC______ ..........(((.....((((((((((...........((((............))))...............(((((....))))).)))))))....)))..)))........... (-16.82 = -16.18 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:49 2006