Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,810,976 – 14,811,096 |
Length | 120 |
Max. P | 0.938439 |
Location | 14,810,976 – 14,811,096 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.06 |
Mean single sequence MFE | -17.42 |
Consensus MFE | -14.24 |
Energy contribution | -13.92 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -1.88 |
Structure conservation index | 0.82 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14810976 120 - 20766785 CUAAGAGCAACAAAGACAUGAAAAAAAAAAUAAAUAAAAGUUCGCACUGUGUGCCAAAAGCAUACAAAAUAAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACGAUUGUUUAG ....((((.....((((......................(....)..(((((((.....)))))))...........)))).....(((((.......))))).))))............ ( -19.50) >DroSec_CAF1 12775 119 - 1 CUAAGAGCAACAAAACCAUGAAAA-AAAAAUAAAUAAAAGUUCGCACUGUGUGCCAAAAACAUACAAAAUAAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACGAUUGUUUAG ....((((................-......................((((((.......))))))....................(((((.......))))).))))............ ( -15.50) >DroSim_CAF1 7080 120 - 1 CUAAGAGCAACAAAAACAUGAAAAAAAAAAUAAAUAAAAGUUCGCACUGUGUGCCAAAAACAUACAAAAUAAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACUAUUGUUUAG ..............................(((((((.(((..((..((((((.......))))))....................(((((.......))))).))..))).))))))). ( -16.60) >DroEre_CAF1 5698 114 - 1 CUGAGGGCAACAAAAACCUGAAAAA---AAUAUAUAAAAGUUCGCACUGUGUGCCAAAAACAC---AAAAUAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACGAUUGUUUAG ....((((.................---...................(((((.......))))---)...................(((((.......))))).))))............ ( -14.70) >DroYak_CAF1 6907 116 - 1 CUAAGAGCAACAAAAACAUGAAAAA---AG-AACUAAAAGUUCGCACUGUGUGCCAAAAACAUACAAAAACAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACGAUUGUUUAG ....((((.....((((........---.(-(((.....))))....((((((.......))))))...........)))).....(((((.......))))).))))............ ( -20.80) >consensus CUAAGAGCAACAAAAACAUGAAAAAAAAAAUAAAUAAAAGUUCGCACUGUGUGCCAAAAACAUACAAAAUAAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACGAUUGUUUAG ....((((...............................(((.((((...))))....))).........................(((((.......))))).))))............ (-14.24 = -13.92 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:48 2006