Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,809,589 – 14,809,698 |
Length | 109 |
Max. P | 0.694577 |
Location | 14,809,589 – 14,809,698 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.64 |
Mean single sequence MFE | -34.04 |
Consensus MFE | -27.10 |
Energy contribution | -27.70 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.07 |
Mean z-score | -1.64 |
Structure conservation index | 0.80 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14809589 109 - 20766785 CCAAAUCCAACCAGGUGUGCUGCGGUUG-----------CCCACGUUAUCGCGCGACAUUUGUGUCUCUUCGCAACAGGGGACAUACAUAUGUACACACACAUAUACUAUAUAUUUUCCU ...........(((((((((.(((((.(-----------(....)).))))))).)))))))((((((((......))))))))...((((((......))))))............... ( -26.10) >DroSec_CAF1 11426 116 - 1 CCAAAUCCAACCAGGUGUGCUGCGGUUGGCGGGGGGAAGCCCUCCUUAUCGCGCGACAUUUGUGUCUCCUCGCAACAGGGGACA----UAUGUACACACACAUAUACUAUAUAUUUUCCU ...........(((((((((.(((((.((.(((((....))))))).))))))).))))))).(((((((......)))))))(----(((((......))))))............... ( -39.40) >DroSim_CAF1 5711 116 - 1 CCAAAUCCAACCAGGUGUGCUGCGGUUGGCGGGGGGAAGCCCACCUUAUCGCGCGACAUUUGUGUCUCCUCGCAACAGGGGACA----UAUGUACACACACAUAUACCAUAUAUUUUCCU ...........(((((((((.(((((.((.(((......))).))..))))))).))))))).(((((((......)))))))(----(((((......))))))............... ( -36.30) >DroEre_CAF1 4242 115 - 1 CCAAAUCCAACCAGGUGUGCUGCGGUUGGUGGGGGGAAGCCCACCUUAUCGCGCGACAUUUGUGUCUCUUCGCAACAGGGGACA----UAUGUACAUACAUAUG-AAUAUAUAUUUUUCU ...........(((((((((.(((((.((((((......))))))..))))))).))))))).(((((((......)))))))(----(((((.(((....)))-.))))))........ ( -37.70) >DroYak_CAF1 5480 103 - 1 CCAAAUCCAACCAGGUGUGUUGCGGUUGGCGGGGGGAAGCCCACCUUAUCGCGCGACAUUUGUGUCUCUUCGCAACAGGGGACA----UAUGUACAU-------------AUAUUUUCCU ............(((.(((((((((.(((.(((((....))).))))).).)))))))).((((((((((......))))))))----)).......-------------.......))) ( -30.70) >consensus CCAAAUCCAACCAGGUGUGCUGCGGUUGGCGGGGGGAAGCCCACCUUAUCGCGCGACAUUUGUGUCUCUUCGCAACAGGGGACA____UAUGUACACACACAUAUACUAUAUAUUUUCCU ...........(((((((((.(((((.((.(((......))).))..))))))).)))))))((((((((......)))))))).................................... (-27.10 = -27.70 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:43 2006