Locus 451

Sequence ID 2R_DroMel_CAF1
Location 2,593,571 – 2,593,662
Length 91
Max. P 0.847424
window862

overview

Window 2

Location 2,593,571 – 2,593,662
Length 91
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 75.99
Mean single sequence MFE -22.85
Consensus MFE -15.31
Energy contribution -15.57
Covariance contribution 0.25
Combinations/Pair 1.25
Mean z-score -1.44
Structure conservation index 0.67
SVM decision value 0.77
SVM RNA-class probability 0.847424
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2593571 91 + 20766785
------AGGUCUGGAUUUAUGUCUCGGCUCAUUAGGAAGCUAAUUUGUCAUGUGUUCAACACG----CGCG---UCUUCUA-A---UC-CGGCGAGACUUUAAAUUUUU
------......(((((((.((((((.(..(((((((.((......)).((((((.......)----))))---).)))))-)---).-.).))))))..))))))).. ( -21.60)
>DroVir_CAF1 31138 103 + 1
AAAAGCAUGUCAAGAUUUAUGUCUCAGCUCAUUAGGAAGCUAAUUUGUCAUGUGUUUUGUGUG----UAUGUGUUUUUUUGUUUGUGCAC-GCGCGACUUUAAAUU-UU
....(((((.((((((....)))..((((........))))...))).)))))(((.((((((----((((............)))))))-))).)))........-.. ( -22.60)
>DroPse_CAF1 33436 98 + 1
--AAACAUGUCAAGAUUUAUGUCUUGGCUCAUUAGGAAGCUAAUUUGUCAUGUGUUCUGCGCUGCAUUGAG---CG-UGUA-A---GC-CGGCGAGACUUUAAAUUUUU
--.........((((((((.((((((((..(((((....)))))..))).((.(((.(((((.((.....)---))-))))-)---))-))..)))))..)))))))). ( -23.00)
>DroYak_CAF1 26441 90 + 1
------ACGUUUGGAUUUAUGUCUCGGCUCAUUAGGAAGCUAAUUUGUCAUGUGUUCAACACG----CGUG---CGUUCUA-A---UC-CGGCGAGACUUUAAAUU-UU
------......(((((((.((((((.(..(((((((.((......))(((((((.....)))----))))---..)))))-)---).-.).))))))..))))))-). ( -24.40)
>DroAna_CAF1 29244 82 + 1
------AUGUCAAGAUUUAUGUCUCGACUCAUUAGGAAGCUAAUUUGUCAUGUGUUUUCAGC----------------GUA-A---GC-CUUCGAGACUUUAAAUUUUU
------.....((((((((.((((((((..(((((....)))))..)))...........((----------------...-.---))-....)))))..)))))))). ( -22.50)
>DroPer_CAF1 40886 98 + 1
--AAACAUGUCAAGAUUUAUGUCUUGGCUCAUUAGGAAGCUAAUUUGUCAUGUGUUCUGCGCUGCAUUGAG---CG-UGUA-A---GC-CGGCGAGACUUUAAAUUUUU
--.........((((((((.((((((((..(((((....)))))..))).((.(((.(((((.((.....)---))-))))-)---))-))..)))))..)))))))). ( -23.00)
>consensus
______AUGUCAAGAUUUAUGUCUCGGCUCAUUAGGAAGCUAAUUUGUCAUGUGUUCUGCGCG____UGAG___CG_UGUA_A___GC_CGGCGAGACUUUAAAUUUUU
...........((((((((.((((((((..(((((....)))))..)))..(((.....)))...............................)))))..)))))))). (-15.31 = -15.57 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:53 2006