Locus 4505

Sequence ID 2R_DroMel_CAF1
Location 14,804,436 – 14,804,556
Length 120
Max. P 0.577314
window7211

overview

Window 1

Location 14,804,436 – 14,804,556
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.58
Mean single sequence MFE -49.60
Consensus MFE -44.21
Energy contribution -45.27
Covariance contribution 1.06
Combinations/Pair 1.03
Mean z-score -1.49
Structure conservation index 0.89
SVM decision value 0.09
SVM RNA-class probability 0.577314
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14804436 120 - 20766785
ACUCCAUGCCCAAGGCCCCCUUCUGGCGAGCGGAGUAGAAGCUAGUGCAGAAGGCCAUCAUAAGGGGGAAACCAUUCGAUCGGCCCAGCUCCAUCAGGGUGGCGGCCAGGCGGGAGCCCA
.((((.((((...((((((.((((((.((((.........((....))....(((((((......((....))....))).))))..))))..)))))).)).)))).)))))))).... ( -49.20)
>DroSec_CAF1 6353 120 - 1
ACUCCAUGCCCAGAGCCUCCUUCUGGCGAGCAGAGUAGAAGCUAGUGCAGAAGGCCAUCAUAAGGGGGAAGCCAUUCGAUCGGCCCAGGUCCAUCAGGGUGGCGGCCAGGCGGGAGCCCA
.((((.((((..(.(((.(((((((((.(((.........))).)).)))))))((..(....)..))..((((((((((.(((....))).))).))))))))))).)))))))).... ( -46.30)
>DroSim_CAF1 449 120 - 1
ACUCCAUGCCCAAAGCCUCCUUCUGGCGAGCAGAGUAGAAGCUAGUGCAGAAGGCCAUCAUAAGGGGGAAGCCAUUCGAUCGGCCCAGGUCCAUCAGGGUGGCGGCCAGGCGGGAGCCCA
.((((.((((....(((.(((((((((.(((.........))).)).)))))))((..(....)..))..((((((((((.(((....))).))).))))))))))..)))))))).... ( -45.90)
>DroYak_CAF1 434 120 - 1
ACUCCAUGCCCAAGGCCUUCUUCUGUCGAGCGGAGUAGAAGCUGGUGCAGAAGGCCACCAUAAGGGGGAAACCCUUCGAUCGGCCCAGGUCCAUCAGAGUGGCGGCCAGGCGGGAGCCCA
.((((.((((...((((..((((((((.(((.........))).).)))))))((((((...(((((....))))).(((.(((....))).))).).))))))))).)))))))).... ( -57.00)
>consensus
ACUCCAUGCCCAAAGCCUCCUUCUGGCGAGCAGAGUAGAAGCUAGUGCAGAAGGCCAUCAUAAGGGGGAAACCAUUCGAUCGGCCCAGGUCCAUCAGGGUGGCGGCCAGGCGGGAGCCCA
.((((.((((...((((..((((((((.(((.........))).)).))))))((((((......((....))....(((.(((....))).)))..)))))))))).)))))))).... (-44.21 = -45.27 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:30 2006