Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,798,457 – 14,798,562 |
Length | 105 |
Max. P | 0.613869 |
Location | 14,798,457 – 14,798,562 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 80.92 |
Mean single sequence MFE | -40.47 |
Consensus MFE | -28.04 |
Energy contribution | -27.60 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.30 |
Mean z-score | -1.40 |
Structure conservation index | 0.69 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14798457 105 - 20766785 GGAUGAGAACCACGUAGGCGCCGAGCGGGAAGCGGAGGCCAACGAUGCCAACUGCACCGUUUGUGGUGCCGCCAAGGCAUCGGCGCUUUUGGAUCUGCGCUCCAA ((((((((.(((...(((((((((((((...((((.(((.......)))..)))).))))))..((((((.....))))))))))))).))).))).)).))).. ( -48.00) >DroSec_CAF1 10919 105 - 1 GGAACAGAAUCAUGUAGGGACCGAGCGGGAGGCGGAAGCCAACGAUGCCAACUGCACCGUUUGUGGUGCCGCCAAGGCGUCGGCGCUGUUGGAUCUGCGCUCCAA ...(((......)))............(((((((((..((((((.((((....((((((....))))))(((....)))..)))).)))))).))))).)))).. ( -42.10) >DroSim_CAF1 15863 105 - 1 GGAACAGAAUCAUGUAGGGACCGAGCGGGAGGCGGAGGCCAACGAUGCCAACUGCACCGUUUGUGGUGCCGCCAAGGCGUCGGCGCUGUUGGAUCUGCGCUCCAA ...(((......)))............(((((((((..((((((.((((....((((((....))))))(((....)))..)))).)))))).))))).)))).. ( -43.30) >DroEre_CAF1 1824 99 - 1 GGUACAGAAUCAUG------CCGAGCGGGAGGCGGAAGCCAACGAUGCCAAUUGCACCAUAUGUGGUGCCGCGAAGGCCUCGGCUCUCUUAGAUCUGCGCUCCAA ((((........))------))(((((((((((....)))...((.(((....((((((....)))))).((....))...))))).......))).)))))... ( -39.00) >DroYak_CAF1 16690 105 - 1 GGUACAGAAUCAUGCAGCUGCCGAGCGGGAGGCGGAAGCCAACGAUGCCAAUUGCACCAUAUGUGGUGCCGCAAAGGCCUCGGCUCUCUUGGAUCUGCGCUCCAA .............((((...(((((.(((.(((....)))..(((.(((....((((((....))))))......))).))).))).)))))..))))....... ( -41.50) >DroAna_CAF1 1895 102 - 1 CGAAAAGGUGGAUGU---CUCUGGACGGGAAGCGGAAGCCCAUGAAGUUAACUGCACUAUUUGCGGAGCUAAGAAAGCAUCGGCACUUCUGGACCUGCGUUCCAA ........((((.((---(....)))(((..((....))(((.(((((...(((((.....))))).(((.....)))......)))))))).)))....)))). ( -28.90) >consensus GGAACAGAAUCAUGUAGGCACCGAGCGGGAGGCGGAAGCCAACGAUGCCAACUGCACCAUUUGUGGUGCCGCCAAGGCAUCGGCGCUCUUGGAUCUGCGCUCCAA ......................(((((((((((....)))..(((.(((....((((((....))))))......))).)))...........))).)))))... (-28.04 = -27.60 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:29 2006