Locus 4503

Sequence ID 2R_DroMel_CAF1
Location 14,796,489 – 14,796,584
Length 95
Max. P 0.547251
window7209

overview

Window 9

Location 14,796,489 – 14,796,584
Length 95
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 73.43
Mean single sequence MFE -30.32
Consensus MFE -14.58
Energy contribution -14.58
Covariance contribution 0.00
Combinations/Pair 1.24
Mean z-score -1.68
Structure conservation index 0.48
SVM decision value 0.03
SVM RNA-class probability 0.547251
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14796489 95 - 20766785
ACGCAGCCCAUGCACUUGCCUCAACAUAAACCCUUUCGUUUCGCUAUCGGAAUAUGUGAUUUCGAGGAGCGAAAUCCG---AACUGCGUUGGAUGUCA----------------
((((((.....((....))...............(((((((((((.(((((((.....)))))))..)))))))..))---)))))))).........---------------- ( -25.90)
>DroVir_CAF1 3 101 - 1
AAUCGGCCCAUGCAUUUGCCAAAUCAUAAACCCUUCCGUUUUGCCAUUGGCAUUUGCGAGUUCGACAAUCGCAAUCCGCCCAAUUGUGUGGGCUGCCUGUA-------------
...(((((((((((..((((((.....((((......)))).....)))))).((((((.........))))))..........)))))))))))......------------- ( -32.10)
>DroSec_CAF1 8941 111 - 1
ACGCAGCCCAUGCACUUGCCCCAACAUAAACCCUUUCGUUUCGCCAUCGGAAUUUGCGAUUUCGAGGAGCGAAAUCCG---AACUGCGUGGGAUGUCACUGAUUACGAACUUGU
..(((.((((((((..((......))........(((((((((((.((((((((...)))))))).).))))))..))---)).)))))))).))).................. ( -29.70)
>DroSim_CAF1 13885 111 - 1
ACGCAGCCCAUGCACUUGCCCCAACAUAAACCCUUUCGUUUCGCCAUCGGAAUUUGCGAUUUCGAGGAGCGAAAUCCG---AACUGCGUGGGCUGUCACUGAUUACGAACUUGU
..((((((((((((..((......))........(((((((((((.((((((((...)))))))).).))))))..))---)).)))))))))))).................. ( -36.30)
>DroMoj_CAF1 3 101 - 1
AAUCGGCCCAUGCAUUUGCCGCAUCACAAACCCUUUCGCUUCGCCAUCGGCAUCUGCGAGUUCGAUAAUCGCAAUCCACCCAACUGCGUGGGCUGUCUUUA-------------
...(((((((((((.(((........................(((...)))...(((((.........))))).......))).)))))))))))......------------- ( -30.40)
>DroPer_CAF1 23511 112 - 1
AGCAGACCCAUGCACUUGCCCAACCAUAAGCCCUUCCGCUUCGCCAUUGGAAUAUGCGAUUUCGAGAACCGCCACCAGCCCAAUUGUGUGGGCUGCCAGUAACUUA--AGUUGA
.((((.((((((((.(((.((((....((((......)))).....)))).....(((...........)))........))).))))))))))))...((((...--.)))). ( -27.50)
>consensus
ACGCAGCCCAUGCACUUGCCCCAACAUAAACCCUUUCGUUUCGCCAUCGGAAUUUGCGAUUUCGAGAAGCGAAAUCCG___AACUGCGUGGGCUGUCACUA_____________
...((.((((((((..((......)).......(((((..((((...........))))...))))).................)))))))).))................... (-14.58 = -14.58 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:28 2006