Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,785,982 – 14,786,086 |
Length | 104 |
Max. P | 0.658877 |
Location | 14,785,982 – 14,786,086 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 94.38 |
Mean single sequence MFE | -30.43 |
Consensus MFE | -27.27 |
Energy contribution | -26.83 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.89 |
Structure conservation index | 0.90 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658877 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14785982 104 - 20766785 AUGCAUAUGCAUAGAUAUAGAUACAAAAGUA----CAUAUGCUCUCCAUGAAGCGCGCAGAUACGAAUGCGUUGGCUAUAAAUAGCGAGCCAUGCCAUUUGUGCCGCC ((((....))))(((((((..(((....)))----..)))).))).......((((((((((....(((.(((.((((....)))).))))))...))))))).))). ( -27.10) >DroSec_CAF1 20891 104 - 1 AUGCGUAUGCAUAGAUACAGAUACAAAAGUA----CAUAUGCUCUCCAUGUAGCGCGCAGAUACGAAUGCGUUGGCUAUAAAUAGCGAGCCAUGCCAUUUGUGCCGCC .(((((..(((((..(((..........)))----..))))).....)))))((((((((((....(((.(((.((((....)))).))))))...))))))).))). ( -29.00) >DroEre_CAF1 20203 107 - 1 GUGCAUAUGCAUAGAUACAGAUACAAA-GUACAUGCAUAUGCUCUCCAUGUAGCGCGCAGAUACGAAUGCGUUGGCUAUAAAUAGCGAGCCAUGCCAUUUGUGCCGCC (.((((((((((.(.(((.........-)))))))))))))).)........((((((((((....(((.(((.((((....)))).))))))...))))))).))). ( -35.20) >consensus AUGCAUAUGCAUAGAUACAGAUACAAAAGUA____CAUAUGCUCUCCAUGUAGCGCGCAGAUACGAAUGCGUUGGCUAUAAAUAGCGAGCCAUGCCAUUUGUGCCGCC ..(((((((......(((..........)))....)))))))..........((((((((((....(((.(((.((((....)))).))))))...))))))).))). (-27.27 = -26.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:25 2006