Locus 450

Sequence ID	2R_DroMel_CAF1
Location	2,592,211 – 2,592,314
Length	103
Max. P	0.820897

overview

Window 0

Location	2,592,211 – 2,592,314
Length	103
Sequences	5
Columns	103
Reading direction	forward
Mean pairwise identity	89.67
Mean single sequence MFE	-23.52
Consensus MFE	-19.00
Energy contribution	-19.88
Covariance contribution	0.88
Combinations/Pair	1.05
Mean z-score	-1.69
Structure conservation index	0.81
SVM decision value	0.68
SVM RNA-class probability	0.820897
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2592211 103 + 20766785
AAUUAUAUUGUCCAGGCUGGGCCCGGCCAGUUUGCCUUUGACUCCGGCCAUCCAGCAAUUUAGCCCCCUCUUAGACAAUCGCAAUACCCCAAUCCUCCAAUCC
......((((((.(((..(((...((((((((.......))))..)))).....((......)))))..))).))))))........................ ( -21.30)
>DroSec_CAF1 26334 103 + 1
AAUUAUAUUGUCCAGGCCGGGCCAGGCCAGUUUGCCUUUGACUCCUGCCAUCCAGCAAUUUAGCCCCCUCUUAGACAAUCGCAAUGCCCCAAUCCUCCAAUCC
......((((((.(((..((((.((((......))))........(((......))).....))))...))).))))))........................ ( -19.80)
>DroSim_CAF1 25887 103 + 1
AAUUAUAUUGUCCAGGCCGGGCCAGGCCAGUUUGCCUUUGACUCCGGCCAUCCAGCAAUUUAGCCCCCUCUUAGACAAUCGCAAUGCCCCAAUUCUCCAAUCC
......((((((..(((((((..((((......)))).....))))))).....((......)).........))))))........................ ( -23.60)
>DroEre_CAF1 25067 91 + 1
AAUUAUAUUGUCCAGGCCGG-GCAGGGCAGUUUGCCUUUGACUCCGGCCAUCCAGCAAUUUAGCCCCCUCUUAGACAAUCGCA---------GC--CCAAUCC
......((((((..((((((-(((((((.....))).))).).)))))).....((......)).........))))))....---------..--....... ( -26.00)
>DroYak_CAF1 25123 99 + 1
AAUUAUAUUGUCCAGGCCGGGGCUGGCCAGUUUGCCUUUGACUCCGGCCAACCUGCAAUUUAGCCCCCUCUUAGACAAUCGCCAU--CCCAGUC--CCAAUCC
......((((((.(((..(((((((((..(((.(((.........))).)))..))....)))))))..))).))))))......--.......--....... ( -26.90)
>consensus
AAUUAUAUUGUCCAGGCCGGGCCAGGCCAGUUUGCCUUUGACUCCGGCCAUCCAGCAAUUUAGCCCCCUCUUAGACAAUCGCAAU_CCCCAAUCCUCCAAUCC
......((((((..(((((((..((((......)))).....))))))).....((......)).........))))))........................ (-19.00 = -19.88 +   0.88)

alignment

secondary structure

dotplot

Window 1

Location	2,592,211 – 2,592,314
Length	103
Sequences	5
Columns	103
Reading direction	reverse
Mean pairwise identity	89.67
Mean single sequence MFE	-32.24
Consensus MFE	-25.74
Energy contribution	-26.34
Covariance contribution	0.60
Combinations/Pair	1.00
Mean z-score	-1.44
Structure conservation index	0.80
SVM decision value	0.10
SVM RNA-class probability	0.585918
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2592211 103 - 20766785
GGAUUGGAGGAUUGGGGUAUUGCGAUUGUCUAAGAGGGGGCUAAAUUGCUGGAUGGCCGGAGUCAAAGGCAAACUGGCCGGGCCCAGCCUGGACAAUAUAAUU
..((((.(((.(((((.(...((((((((((......))))..))))))....(((((((.((.....))...)))))))).))))))))...))))...... ( -31.50)
>DroSec_CAF1 26334 103 - 1
GGAUUGGAGGAUUGGGGCAUUGCGAUUGUCUAAGAGGGGGCUAAAUUGCUGGAUGGCAGGAGUCAAAGGCAAACUGGCCUGGCCCGGCCUGGACAAUAUAAUU
..((((.(((.(((((.(...........((....))((((((..(((((...((((....))))..)))))..))))))).))))))))...))))...... ( -30.40)
>DroSim_CAF1 25887 103 - 1
GGAUUGGAGAAUUGGGGCAUUGCGAUUGUCUAAGAGGGGGCUAAAUUGCUGGAUGGCCGGAGUCAAAGGCAAACUGGCCUGGCCCGGCCUGGACAAUAUAAUU
........................((((((((......(((......)))....((((((.((((..(((......)))))))))))))))))))))...... ( -32.80)
>DroEre_CAF1 25067 91 - 1
GGAUUGG--GC---------UGCGAUUGUCUAAGAGGGGGCUAAAUUGCUGGAUGGCCGGAGUCAAAGGCAAACUGCCCUGC-CCGGCCUGGACAAUAUAAUU
.......--..---------....((((((((......(((......)))....((((((.((....(((.....)))..))-))))))))))))))...... ( -29.00)
>DroYak_CAF1 25123 99 - 1
GGAUUGG--GACUGGG--AUGGCGAUUGUCUAAGAGGGGGCUAAAUUGCAGGUUGGCCGGAGUCAAAGGCAAACUGGCCAGCCCCGGCCUGGACAAUAUAAUU
...(..(--(.((((.--...((((((((((......))))..)))))).((((((((((.((.....))...))))))))))))))))..)........... ( -37.50)
>consensus
GGAUUGGAGGAUUGGGG_AUUGCGAUUGUCUAAGAGGGGGCUAAAUUGCUGGAUGGCCGGAGUCAAAGGCAAACUGGCCUGGCCCGGCCUGGACAAUAUAAUU
........................((((((((.(.((((((((..(((((...((((....))))..)))))..)))))...)))..).))))))))...... (-25.74 = -26.34 +   0.60)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:52 2006