Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,781,141 – 14,781,231 |
Length | 90 |
Max. P | 0.535912 |
Location | 14,781,141 – 14,781,231 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 80.35 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -14.43 |
Energy contribution | -14.46 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.22 |
Mean z-score | -1.75 |
Structure conservation index | 0.57 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14781141 90 + 20766785 ----UCUUUCGCGCAUGCACAUGUGCAACGCAUUUUCCCGAAAAUUAAAU-------G-CAACAUUGCGCCGCCGCG-----ACUCAAUUGCGUGGUUAAUGCUAAU ----......(((((((((....))))..((((((...........))))-------)-).....))))).((((((-----.(......))))))).......... ( -25.00) >DroVir_CAF1 12825 99 + 1 ACAUAUGUAUGCAG----GCCAGUGCAC---AUUGCACUCGAAUCGCCGUUUUCGCCGCCAACG-UACGCUGCCGCUGCUGUAGUCAAUUGCGUGGUUAAUGCUAAU ......(((((..(----((.(((((..---...)))))((((........))))..)))..))-)))((.(((((.((...........)))))))....)).... ( -27.10) >DroSec_CAF1 16033 90 + 1 ----UCUUUCGCGCAUGCACAUGUGCAACGCAUUUUCCCGAAAAUUAAAU-------G-CAACAUUGCGCCGCCGCG-----ACUCAAUUGCGUGGUUAAUGCUAAU ----......(((((((((....))))..((((((...........))))-------)-).....))))).((((((-----.(......))))))).......... ( -25.00) >DroSim_CAF1 22536 90 + 1 ----UCUUUCGCGCAUGCACAUGUGCAACGCAUUUUCCCGAAAAUUAAAU-------G-CAACAUUGCGCCGCCGCG-----ACUCAAUUGCGUGGUUAAUGCUAAU ----......(((((((((....))))..((((((...........))))-------)-).....))))).((((((-----.(......))))))).......... ( -25.00) >DroEre_CAF1 15084 90 + 1 ----CCUUUCGCGCAUGCACAUGUGCAACGCAUUUUCCCGAAAAUUAAAU-------G-CAACAUUGCGCCGCCGCG-----ACUCAAUUGCGUGGUUAAUGCUAAU ----......(((((((((....))))..((((((...........))))-------)-).....))))).((((((-----.(......))))))).......... ( -25.00) >DroYak_CAF1 22612 90 + 1 ----CCGUUCGCGCAUGCACAUGUGCAACGCAUAUUCCCGAAAAUUAAAU-------G-CAACAUUGCGCUGCCGCG-----ACUCAAUUGCGUGGUUAAUGCUAAU ----..(((.((((((....)))))))))((((.................-------(-((....)))...((((((-----.(......)))))))..)))).... ( -23.50) >consensus ____UCUUUCGCGCAUGCACAUGUGCAACGCAUUUUCCCGAAAAUUAAAU_______G_CAACAUUGCGCCGCCGCG_____ACUCAAUUGCGUGGUUAAUGCUAAU ..........((((((....))))))....................................(((((.(((((.((..............))))))))))))..... (-14.43 = -14.46 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:22 2006