Locus 4498

Sequence ID 2R_DroMel_CAF1
Location 14,780,749 – 14,780,842
Length 93
Max. P 0.983621
window7201

overview

Window 1

Location 14,780,749 – 14,780,842
Length 93
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 95.52
Mean single sequence MFE -24.58
Consensus MFE -22.36
Energy contribution -22.36
Covariance contribution -0.00
Combinations/Pair 1.07
Mean z-score -1.71
Structure conservation index 0.91
SVM decision value 1.95
SVM RNA-class probability 0.983621
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14780749 93 - 20766785
CUACUUUUCGAC--UUUUUGUUUUUCAUUUUUGGGAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGC
((((...(((..--.((((((((..((....))..)..((((......)))))))))))....(((((...........))))).)))..)))). ( -23.10)
>DroSec_CAF1 15648 93 - 1
CCACUUAUCGAC--UUUUUGUUUUUCAUUUUUGGGAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGC
((((..((((..--.((((((((..((....))..)..((((......)))))))))))....(((((...........))))).)))).)))). ( -25.80)
>DroSim_CAF1 22150 93 - 1
CCACUUUUCGAC--UUUUUGUUUUUCAUUUUUGGGAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGC
((((...(((..--.((((((((..((....))..)..((((......)))))))))))....(((((...........))))).)))..)))). ( -25.40)
>DroEre_CAF1 14691 93 - 1
CUAUUUUUCGAC--CUUUUGUUUUUCAGCUUCGGCAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGC
.....(((((..--.(((((((.....((....))...((((......))))))))))).))))).....((((((((........)))))))). ( -25.00)
>DroYak_CAF1 22229 95 - 1
CUACUUUUCGACUCUUUUUGUUUUUCAUUUUUGGGAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGC
((((...(((..((.((((((((..((....))..)..((((......)))))))))))..))(((((...........))))).)))..)))). ( -23.60)
>consensus
CUACUUUUCGAC__UUUUUGUUUUUCAUUUUUGGGAUCGGCGGCCCUACGCCAACAAAACUGAAGCCACAUCACGAUUUUGGCUACGAUCGUGGC
((((...(((.....((((((((((((....)))))..((((......)))))))))))....(((((...........))))).)))..)))). (-22.36 = -22.36 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:21 2006