Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,775,453 – 14,775,558 |
Length | 105 |
Max. P | 0.974898 |
Location | 14,775,453 – 14,775,558 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 73.44 |
Mean single sequence MFE | -34.68 |
Consensus MFE | -19.08 |
Energy contribution | -19.33 |
Covariance contribution | 0.26 |
Combinations/Pair | 1.36 |
Mean z-score | -2.15 |
Structure conservation index | 0.55 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14775453 105 + 20766785 CUC---------CUAGUUCCGCGCAGACGGAACGCAAGUGCCGGGAAUUAUUGAAGAAGUUGCAGAGCAUCACCAAUCAGACAGAUGCCAUGACGCGCAAUUUCUUCAGUAACA .((---------((.((((((......))))))((....)).)))).((((((((((((((((...((.(((...(((.....)))....))).)))))))))))))))))).. ( -37.30) >DroSec_CAF1 10370 105 + 1 CUC---------CUAGUGCCGCGCAGACGGAACUCAAGUGCCGGGAGAUAUUGAAGAAGUUGCAGAGCUAUACCAAUCAGACGGAUGCCAUGACGCGCAAUUUCUUCAAUAACA (((---------(...(((...)))..(((.((....)).))))))).(((((((((((((((.........((........))..((......)))))))))))))))))... ( -32.40) >DroSim_CAF1 16847 105 + 1 GUC---------CUAGUGCCGCGCAGAUCGAACUCAAGUGCCGGGAGAUAUUGCAGAAGUUGCAGAGCUAUACCAAUCAGACGGAUGCCAUGACGCGCAAUUUCUUCAAUAACA .((---------(..(..(...(.((......)))..)..)..)))(.(((((.(((((((((.........((........))..((......))))))))))).))))).). ( -24.40) >DroEre_CAF1 9463 114 + 1 UCAGAAAGAUGGUCAGUUCCGCUCAAACGGAACGCAGUUGCCGCGAUCUAUUGAAGAAGUUGCAGAACCUCACCAAUCAGUCGGAAACCACGGCGCGCAAUUUCUUCAAUACCA ..........((((.((((((......))))))((.......))))))(((((((((((((((.(.....)........((((.......))))..)))))))))))))))... ( -36.90) >DroYak_CAF1 16723 114 + 1 CCAGAAAGAUGGUCAGUUCCGCACAAACGGAACGCAAGUGCCGAGAUCUUUUGAAGAAGUUGCAGAGCUUCACCAAUCAGUCGGACACCACGGCGCGCAACUUCUUCAAUAGCA ..........((((.((((((......))))))((....))...))))..(((((((((((((.((..........)).((((.......))))..)))))))))))))..... ( -37.10) >DroAna_CAF1 6438 114 + 1 CCAAGGCGGUGGCCACCUCCGCCCAGACGGAGCACAUCUGCCGGGAGCAGCUCAAAAAGCUGCAAGCGGUCACCAACCAGGCGGACACCACAGCCCGAAACUUCUUCAACUCCA ....(((.((((....(((((......)))))....((((((.((.((((((.....))))))....((...))..)).))))))..)))).))).(((.....)))....... ( -40.00) >consensus CCA_________CCAGUUCCGCGCAGACGGAACGCAAGUGCCGGGAGCUAUUGAAGAAGUUGCAGAGCUUCACCAAUCAGACGGAUACCACGACGCGCAAUUUCUUCAAUAACA ...............((((((......))))))...............(((((((((((((((.((..........))...((.......))....)))))))))))))))... (-19.08 = -19.33 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:19 2006