Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,770,667 – 14,770,761 |
Length | 94 |
Max. P | 0.977833 |
Location | 14,770,667 – 14,770,761 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 92.05 |
Mean single sequence MFE | -21.58 |
Consensus MFE | -19.27 |
Energy contribution | -18.79 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.10 |
Mean z-score | -1.71 |
Structure conservation index | 0.89 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14770667 94 - 20766785 ---AUUGGAAUCGGGAAAGAAGGGAAUAAAAGUCGGGAUUGGGAUGCACAUUUAAAAUGUGCAGCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCU--GG ---........((((...............(((((((((((...(((((((.....))))))).))))))....))))).............)))--). ( -20.69) >DroSec_CAF1 5523 94 - 1 ---AUUGGAAUCGGGAAAAAAGGGAAUAAAAGUCGGGAUUGGGAUGCACAUUUAAAAUGUGCACCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCU--GG ---........((((...............((((((((((((..(((((((.....))))))))))))))....))))).............)))--). ( -22.99) >DroSim_CAF1 12004 94 - 1 ---AUUGGAAUCGAGAAAAAAGGGAAUAAAAGUCGGGAUUGGGAUGCACAUUUAAAAUGUGCAGCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCU--GG ---........(.(((..............(((((((((((...(((((((.....))))))).))))))....))))).............)))--.) ( -20.43) >DroEre_CAF1 4310 95 - 1 AGAAUCAGAAUCGGGGAA-AAGGGAAUU-AAGUCGGGAUUGGGAUGCACAUUUUAAAUGUGCAGCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCU--GG .....((((.((......-.........-.(((((((((((...(((((((.....))))))).))))))....)))))..........)).)))--). ( -21.77) >DroYak_CAF1 11601 98 - 1 GGAUUUGGAAUCGAGGAA-AAGGGAAUAAAAGUCGGGAUUGGGAUGCACAUUUUAAAUGUGCAGCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCUGUGG .(((((....((......-..))......))))).((((((...(((((((.....))))))).))))))(((((.(((.....)))....).)))).. ( -22.00) >consensus ___AUUGGAAUCGGGAAA_AAGGGAAUAAAAGUCGGGAUUGGGAUGCACAUUUAAAAUGUGCAGCGAUCUGCAGCGGCUGAUAAAGUAAGAGUCU__GG .............(((..............(((((((((((...(((((((.....))))))).))))))....))))).............))).... (-19.27 = -18.79 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:18 2006