Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,768,420 – 14,768,538 |
Length | 118 |
Max. P | 0.994788 |
Location | 14,768,420 – 14,768,538 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.71 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -20.54 |
Energy contribution | -21.42 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.06 |
Mean z-score | -1.94 |
Structure conservation index | 0.89 |
SVM decision value | 2.51 |
SVM RNA-class probability | 0.994788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14768420 118 + 20766785 --CCCAUUUGCAAAAAUAAAAAGUUACAAAACAUGUCAUUUAUCAUGCUAACAAAGUGUGUCUACUCAGAAUACGCUAUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA --.((((((....)))).....((((((((....((((......((((.((((((((((((((....)).))))))).)))))..)))))))))))))))).))................ ( -23.90) >DroSec_CAF1 3291 118 + 1 --CCCAUUUGCAAAAAUAAAAAGUUACAAAACAUGUCAUUUAUCAUGCUAACAAAGUGUGUCUACUCAGAAGACGCUAUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA --.((((((....)))).....((((((((....((((......((((.(((((...((((((.......))))))..)))))..)))))))))))))))).))................ ( -23.70) >DroSim_CAF1 9758 119 + 1 UCCCCAUUUGCAAAAAUAU-AAGUUACAAAAACAGUCAUUUAUCAUGCUAACAAAGUGUGUCUACUCAGAAGACGCUUUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA ...((((((....))))..-..(((((((....(((((......((((.(((((((.((((((.......)))))))))))))..)))))))))))))))).))................ ( -26.50) >DroEre_CAF1 2152 119 + 1 -CCCCGUUUGCAAAAAUAUAAAGUUACAAAAAAUGUCAUUUAUCAUGCUAACAAAGUGUGUCUACUCAAAAGACGGUUUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA -..((((((....)))).....((((((((....((((......((((.((((((...(((((.......)))))..))))))..)))))))))))))))).))................ ( -21.00) >DroYak_CAF1 9396 119 + 1 -CCCCAUUUGCAAAAGUAAAAAGUUACAAAACAUGUCAUUUAUCAUGCCAACAAAGUGUGUCUACUCGAAAAACGGUUUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA -..((.(((((....)))))..((((((((....((((......((((.((((((.(((.((.....))...))).).)))))..)))))))))))))))).))................ ( -19.80) >consensus _CCCCAUUUGCAAAAAUAAAAAGUUACAAAACAUGUCAUUUAUCAUGCUAACAAAGUGUGUCUACUCAGAAGACGCUUUUGUUUUGCAUUGACUUUGUAACAGGCAUAAAAUUAGAAAAA ...((((((....)))).....((((((((....((((......((((.(((((((.((((((.......)))))))))))))..)))))))))))))))).))................ (-20.54 = -21.42 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:16 2006