Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,585,306 – 2,585,421 |
Length | 115 |
Max. P | 0.819245 |
Location | 2,585,306 – 2,585,421 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 78.90 |
Mean single sequence MFE | -43.85 |
Consensus MFE | -27.25 |
Energy contribution | -28.40 |
Covariance contribution | 1.15 |
Combinations/Pair | 1.31 |
Mean z-score | -1.82 |
Structure conservation index | 0.62 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.819245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2585306 115 + 20766785 CUGCCGCUUUGCCUGAUGGAUGCGUAAUUGGAGGUGGCAUCGCCAAGUCUCCAGUUCCUUGAGCUCAUUU-UGGGAGUCCUUCAGGUGCUGGGUUGCCUCUUGAAGUUGGCAAAUA .(((((((((((((((.((((.....((((((((((((...))))..))))))))((((.(((....)))-.)))))))).))))))((......)).....)))).))))).... ( -40.50) >DroSec_CAF1 19436 115 + 1 CUGCCGCUUUGCCUGAUGGAUGCGGGAUUGGAGAUGGCAGCGCCAACCCUCCAGUUCCUUGAGCUCAUUU-UGCGAGUCCUUCAGGUGCUGGGUUACCUCUUGAAGUUGGCAUAUA .(((((((((((((((.((((.(((((((((((.((((...))))...))))))))))....((......-.))).)))).))))))...((....))....)))).))))).... ( -46.20) >DroSim_CAF1 18640 115 + 1 CUGCCGCUUUGCCUGAUGGAUGCGGGACUGGAGGUGGCAGCGCCAACCCUCCAGUUCCUUGAGCUCAUUU-UGCGAGUCCUUCAGGUGCUGGGUUACCUCUUGAAGUCGGCAAAUA .(((((((((((((((.((((.((((((((((((((((...))))..)))))))))))....((......-.))).)))).))))))...((....))....)))).))))).... ( -54.00) >DroEre_CAF1 18287 115 + 1 CUGCCGAUUUGCCUGUUGGAUGCGGUACUGGAGCUGGCAGCACCAAGUCUCAAGUUCUUUGAGCUCCUUU-UGCGAGUCCUCCAGGUGCUGGGUUACCUCCUGAAGUCGGCAAAUA .((((((((((((((..((((((((....((((((.(.((.((..........)).)).).))))))..)-)))..))))..)))))...(((......))).))))))))).... ( -41.60) >DroYak_CAF1 18239 115 + 1 CUGCCGAUUUGCCUGAUGGAGGCGGGAUUGCAGCUGGCAGCAGCAAGCCUCAAGUUCCUUGAGCUCGUUU-UGCGAAUCCUCCAGGUGUUGGGUUACCUCUCGAAGUCGGCAAAAU .((((((((((((((..(((..((.((..((.((((....)))).(((.(((((...)))))))).)).)-).))..)))..)))))..((((......))))))))))))).... ( -43.50) >DroAna_CAF1 20832 115 + 1 CUGGUGGCUCAUUUUUUGGAUGCGGGAUUGGAGCAGGCAGCGCCAUCCUUCCAGCUCCUUGAUCUGCUUCCUGC-UGGAGUUCAGGUGCUCGUAUGCGGUGGACAGCUUGCAUCGC ..................((((((((.(((..(((.((((((((....(((((((.....((......))..))-)))))....)))))).)).)))......))))))))))).. ( -37.30) >consensus CUGCCGCUUUGCCUGAUGGAUGCGGGAUUGGAGCUGGCAGCGCCAACCCUCCAGUUCCUUGAGCUCAUUU_UGCGAGUCCUUCAGGUGCUGGGUUACCUCUUGAAGUCGGCAAAUA .(((((...((((((..((((..((((((((((.(((.....)))...))))))))))....((........))..))))..))))))..((....)).........))))).... (-27.25 = -28.40 + 1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:50 2006