| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,761,447 – 14,761,559 |
| Length | 112 |
| Max. P | 0.935215 |
| Location | 14,761,447 – 14,761,559 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.82 |
| Mean single sequence MFE | -25.71 |
| Consensus MFE | -21.20 |
| Energy contribution | -21.87 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.935215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14761447 112 + 20766785 GCACGCAGUUGGCAUAAAAGUCGAAA---AAAGAAAUUUGCAAUCAAAUUGGAAGACCGCAGCGAAUAAAAGCCACCGGCUAACUGACCAUUUCGGUUUAUUGGGUGCACA-----AAUA ((((.....((((.......(((...---.....((((((....))))))((....))....)))......))))((((..((((((.....))))))..))))))))...-----.... ( -24.82) >DroSim_CAF1 1875 115 + 1 GCACGCAGUUGGCAUAAAAGUCGAAAAAAAAAGAAAUUUGCAAUCAAAUUGGAAGACCGCAGCGAAUAAAAGCACCCGGCUAACUGACCAAUUCGGUUUAUUGGGUGCACA-----AAUA ...(((..(((((......)))))..........((((((....))))))((....))...))).......((((((((..((((((.....))))))..))))))))...-----.... ( -29.40) >DroYak_CAF1 3221 100 + 1 GCACGCAGUUGGCAUAAAAGUCGAAA---AAACAAAUUUGCAAUCAAAUUGGAAGUCC-----------------CAGGAUAACUGACCAAUUCCGUUUAUUGGGUGCACAAAACAAAUA ((((.((((((((......)))))..---((((.((((((....))))))((((....-----------------(((.....))).....)))))))).))).))))............ ( -22.90) >consensus GCACGCAGUUGGCAUAAAAGUCGAAA___AAAGAAAUUUGCAAUCAAAUUGGAAGACCGCAGCGAAUAAAAGC__CCGGCUAACUGACCAAUUCGGUUUAUUGGGUGCACA_____AAUA ((((.((((((((.....................((((((....))))))((....))....................)))))))).(((((.......)))))))))............ (-21.20 = -21.87 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:57 2006