| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,760,807 – 14,760,906 |
| Length | 99 |
| Max. P | 0.728062 |
| Location | 14,760,807 – 14,760,906 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 68.31 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -15.57 |
| Energy contribution | -15.02 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14760807 99 - 20766785 UUAAACCU--------------------AAGGAUCAUUCUGGUAUUGCUCUAGUGCAUCCAAUCGCUGACCAUU-UCCCUCAGGAUUUUCCUCAGGGGAAACUCAUGUAUAACAGUUGUG ........--------------------..((((((((..((.....))..)))).)))).((.((((....((-(((((.(((.....))).)))))))((....))....)))).)). ( -24.10) >DroSim_CAF1 1200 119 - 1 UUAAACCUCAGGAUAUGGUCACUUGAAUAAGGAUCAUUCUGCUAUUGCUCUAGUGCAUCCAUUCGCUGGCCAUU-UCCCUCAGGACUUUCCUCAGGGGAAACUAAUGUAUAACAGUUGUG ........((.(((.((((((..(((((..((((((((..((....))...)))).))))))))).))))))((-(((((.(((.....))).)))))))..............))).)) ( -32.10) >DroYak_CAF1 2569 86 - 1 -----------------------UGAAUAAGGAUCGUU-----------CUAAUGCAUUCAUUCACUGACCAUUUUCCCUCACGAUUUUCCUCAGGGGAAACGCUGGUAUAACAGUUGAU -----------------------.......((((.((.-----------.....))))))..((((((((((((((((((...(.....)...))))))))...))))....))).))). ( -15.80) >consensus UUAAACCU_______________UGAAUAAGGAUCAUUCUG_UAUUGCUCUAGUGCAUCCAUUCGCUGACCAUU_UCCCUCAGGAUUUUCCUCAGGGGAAACUCAUGUAUAACAGUUGUG ..............................((((((((.............)))).))))....((((.......(((((.(((.....))).)))))..((....))....)))).... (-15.57 = -15.02 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:56 2006