Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,760,040 – 14,760,160 |
Length | 120 |
Max. P | 0.545857 |
Location | 14,760,040 – 14,760,160 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -26.37 |
Consensus MFE | -20.68 |
Energy contribution | -20.58 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.39 |
Structure conservation index | 0.78 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14760040 120 - 20766785 AAAACUAAAAGCAGCGGGCCAAAGUUGAUGCAAUAAUUUGCCACAAGUUUUCCGAGUGACCACAACAACAUGCAAUAUGCAGUGGGCUCGUCAAAACUACACUUCAAACAAAACUCUACU .............(((((((...((((..((((....))))(((..(.....)..)))....))))..(((((.....))).)))))))))............................. ( -22.70) >DroSim_CAF1 427 120 - 1 AAAACUAAAAGCAGCGGGGCAAAGUUGAUGCAAUAAUUUGCCACAACUUUUCCGAGUGACCACAACAACAUGCAAUAUGCAGUGGGCUCGUCAAAACUACACUUCAAAUAAAACUCUGCU .........(((((.((((.(((((((..((((....))))..))))))))))((((..((((.......(((.....)))))))))))........................).))))) ( -29.61) >DroYak_CAF1 1789 120 - 1 AAAACUGGAAACAACGGGCCAAAGUUGAUGCAAUAAUUUGCCACAACUUUUCCGAGUGACCACAACAACAUGCAAUAUGCAGUGGGCUCGUCAAAACUACACUUCAAAUAAAAUCCUACU .....((....))((((((((((((((..((((....))))..)))))))...............((...(((.....))).)))))))))............................. ( -26.80) >consensus AAAACUAAAAGCAGCGGGCCAAAGUUGAUGCAAUAAUUUGCCACAACUUUUCCGAGUGACCACAACAACAUGCAAUAUGCAGUGGGCUCGUCAAAACUACACUUCAAAUAAAACUCUACU ...............(((..(((((((..((((....))))..)))))))..(((((..((((.......(((.....)))))))))))).......................))).... (-20.68 = -20.58 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:55 2006