Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,756,474 – 14,756,570 |
Length | 96 |
Max. P | 0.837767 |
Location | 14,756,474 – 14,756,570 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.02 |
Mean single sequence MFE | -37.43 |
Consensus MFE | -18.79 |
Energy contribution | -18.68 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.30 |
Mean z-score | -2.23 |
Structure conservation index | 0.50 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837767 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14756474 96 + 20766785 CCGGCGGGACAGGCGGGUGG------------CAAGCUGGGCAAGCCAGUGAGCACGCCCACGGUGGUGAAGACCACCACCAAACAGGUGCUGACCAAGAACAUCGAU ..(((((.((..(.((((((------------(..(((((.....)))))..)).))))).)(((((((.....)))))))......)).))).))............ ( -42.10) >DroVir_CAF1 55706 101 + 1 -CGUUGAACCAAGCUGGCGCCGGC------AGCAAGCUGGGCAAGCCAGUGAGCACGCCCACUGUGGUGAAGACGACAACGAAACAGGUGCUGACCAAGAACGAUGGC -((((..((((.(((.((.(((((------.....))))))).)))(((((.(....).)))))))))...)))).((.((.....(((....))).....)).)).. ( -32.60) >DroSec_CAF1 61497 96 + 1 CCGGCGGGACAGUCGGGCGG------------CAAGCUGGGCAAGCCAGUGAGCACGCCCACGGUGGUGAAGACCACCACCAAACAGGUGCUGACCAAGAACAUCGAU ..(((((.((.((.((((((------------(..(((((.....)))))..)).)))))))(((((((.....)))))))......)).))).))............ ( -44.30) >DroEre_CAF1 61389 96 + 1 CCGGCGGCCCAGGCGGGCGG------------CAAGUUGGGCAAGCCGGUGAGCACGCCCACGGUGGUGAAGACCACCACCAAACAGGUGCUGACCAAGAACAUCGAU ..((((((((..(.((((((------------(..(..((.....))..)..)).))))).)(((((((.....))))))).....)).)))).))............ ( -42.10) >DroWil_CAF1 80668 99 + 1 GCA---AAUCAAGCAGACAUCAGUCAAUCAUCCAAAUCGGGCAAG------GGAACACCCACUGUGGUCAAGACCACGACCAAACAGGUGCUGACCAAGAAUAAUGAU ...---.((((.((.(((....)))......((.....))))..(------(..(((((.....(((((........)))))....)))).)..))........)))) ( -22.30) >DroYak_CAF1 62826 96 + 1 CCGGCGGGACAGGCGGGCGG------------CAAGCUUGGCAAGCCAGUGAGCACGCCCACGGUGGUGAAGACCACCACCAAACAGGUGCUGACCAAGAACAUCGAU ..(((((.((..(.((((((------------(..(((.((....)))))..)).))))).)(((((((.....)))))))......)).))).))............ ( -41.20) >consensus CCGGCGGGACAGGCGGGCGG____________CAAGCUGGGCAAGCCAGUGAGCACGCCCACGGUGGUGAAGACCACCACCAAACAGGUGCUGACCAAGAACAUCGAU .(((..........((......................((((..((......))..))))..((((((....)))))).)).....(((....))).......))).. (-18.79 = -18.68 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:54 2006