Locus 4482

Sequence ID 2R_DroMel_CAF1
Location 14,747,352 – 14,747,443
Length 91
Max. P 0.608432
window7168

overview

Window 8

Location 14,747,352 – 14,747,443
Length 91
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 81.18
Mean single sequence MFE -30.77
Consensus MFE -24.47
Energy contribution -26.52
Covariance contribution 2.04
Combinations/Pair 1.10
Mean z-score -1.27
Structure conservation index 0.80
SVM decision value 0.15
SVM RNA-class probability 0.608432
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14747352 91 + 20766785
GAAAUGGGAACGGAUCUGGCUUAUCGACUGACGGGUUCCAUAGAGUCGCCAUCCUCGACUGCC-------AGGCGGUUCCACUCCGUCGAUAAGUCUA
((..((....))..)).(((((((((((.((..((..((....(((((.......)))))((.-------..))))..))..)).))))))))))).. ( -30.30)
>DroSec_CAF1 52418 91 + 1
GAAAUGGGAACGGAUCUGGCUUAUCGACUGGCGGGUUCCAUGGAGUCGCCAUCCUCGACUGCC-------AGGCGGUUCCACUCCGUCGAUAAGUGCA
((....(((((.(.((((((...((((.((((((.((.....)).))))))...))))..)))-------)))).)))))......)).......... ( -34.70)
>DroSim_CAF1 54431 91 + 1
GAAAUGGGAACGGAUCUGGCUUAUCGACUGGCGGGUUCCAUGGAGUCGCCAUCCUCGACUGCC-------AGGCGGUUCCACUCCGUCGAUAAGUGUA
((....(((((.(.((((((...((((.((((((.((.....)).))))))...))))..)))-------)))).)))))......)).......... ( -34.70)
>DroEre_CAF1 52404 74 + 1
GAAAUGGGAACGGAUCUGGCUUAUCGACUGG-----------------CCUUCCUCGACUGCC-------AGGCGGUUCCACUCCGUCGAUAAGUCUA
((..((....))..)).(((((((((.((((-----------------(..((...))..)))-------))((((.......))))))))))))).. ( -25.20)
>DroYak_CAF1 53539 91 + 1
GAAAUGGGAACGGAUCUGGCUUAUCGACUGGCGGGUUCCAUGAAGUCGCCAUCCUCCAUUGCC-------AGGCGGUUCCACUCCGUCGAUAAGUCUA
((..((....))..)).(((((((((((((((((.(((...))).)))))).((.((......-------.)).)).........))))))))))).. ( -32.50)
>DroPer_CAF1 48520 90 + 1
GAAAUGGGAACGGAUCUGGCUUAUCGGGUCG-------CC-UGAGUCGCCUUCCUGCACGGCUCACACAAAUGCAGUUCCGCUCUGCCGAUAAGUCAC
((..((....))..))((((((((((....(-------..-(((((((..........)))))))..)....((((.......)))))))))))))). ( -27.20)
>consensus
GAAAUGGGAACGGAUCUGGCUUAUCGACUGGCGGGUUCCAUGGAGUCGCCAUCCUCGACUGCC_______AGGCGGUUCCACUCCGUCGAUAAGUCUA
((..((....))..)).(((((((((((.(((((.((.....)).)))))......(((((((........))))))).......))))))))))).. (-24.47 = -26.52 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:50 2006