Locus 4481

Sequence ID 2R_DroMel_CAF1
Location 14,742,749 – 14,742,869
Length 120
Max. P 0.666683
window7167

overview

Window 7

Location 14,742,749 – 14,742,869
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.00
Mean single sequence MFE -41.97
Consensus MFE -24.29
Energy contribution -24.02
Covariance contribution -0.27
Combinations/Pair 1.38
Mean z-score -1.68
Structure conservation index 0.58
SVM decision value 0.28
SVM RNA-class probability 0.666683
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14742749 120 + 20766785
AGCUCUACUCGACGACCAGUCGCAAGGCGGAGGCACUUUUCCGCAAGGAUAGCUCCGCCUUCGAGGCCUAUCACGCUGGCUACCGCCAGCAGGUGGAGAAGUGGCCCAUCAAUCCGCUUA
.........((((.....))))..((((((((((((((((((((...(((((....(((.....))))))))..((((((....))))))..)))))))))).)))......))))))). ( -52.60)
>DroVir_CAF1 40739 120 + 1
AGCUGUACACGAUGAACAGCCAAAAGGCGGAGCAACUUUUCCGCUCGGAUGGCGAUGCCUUCGAAGCCUAUCACGCCGGCUAUCGUCAGCAGGUGGAGAAAUGGCCAGCGAAUCCGUUGG
.(((((.(.....).)))))......((((((......))))))(((((.(((...)))))))).(((..((.((((.(((......))).))))..))...)))(((((....))))). ( -40.60)
>DroPse_CAF1 49280 120 + 1
AACUCUACACAAUGAACAGCCACAAGGCGGAGGCCAUGUUCCGCUCAGAUGCCUCCGCAUUCGAUGCCUACCAUGCCGGCUACCGACAGCAAGUGGAAAAGUGGCCAGCGAAUCCGCUAA
..................(((((...((((((((..((.......))...))))))))............((((....(((......)))..))))....))))).((((....)))).. ( -38.70)
>DroWil_CAF1 67139 120 + 1
AACUCUAUAGUAUGACAAGUCGCAAAGCUGAAUCCUUGUUCAGUUCAGAUGCAUCUGCCUUUGAGGCCUAUCAUGCCGGCUAUCGGCAGCAGGUGGAAAAGUGGCCCACAAAUCCUCUAA
..................(((((..((((((((....))))))))....(.(((((((...(((......)))(((((.....)))))))))))).)...)))))............... ( -31.00)
>DroAna_CAF1 40035 120 + 1
AGCUCUAUUCGGUGACCAGUCGCAAGGCGGCCGCCCUCUUCCGCCAGGACGCCUCCGCCUUCGAGGCCUACCACGCAGGCUACCGCCAGCAGGUGGAAAAGUGGCCCACCAACCCGCUGA
..........((((....(((....)))((((((....(((((((.((..(((((.......)))))...))..((.(((....))).)).)))))))..)))))))))).......... ( -50.20)
>DroPer_CAF1 44408 120 + 1
AACUCUACACAAUGAACAGCCACAAGGCGGAGGCCAUGUUCCGCUCAGAUGCCUCCGCAUUCGAUGCCUACCAUGCCGGCUACCGACAGCAAGUGGAAAAGUGGCCAGCGAAUCCGCUAA
..................(((((...((((((((..((.......))...))))))))............((((....(((......)))..))))....))))).((((....)))).. ( -38.70)
>consensus
AACUCUACACGAUGAACAGCCACAAGGCGGAGGCCCUGUUCCGCUCAGAUGCCUCCGCCUUCGAGGCCUACCACGCCGGCUACCGACAGCAGGUGGAAAAGUGGCCAACGAAUCCGCUAA
..................(((((..(((((((......)))))))........(((((((.((..(((.........)))...)).....)))))))...)))))............... (-24.29 = -24.02 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:48 2006