Locus 448

Sequence ID 2R_DroMel_CAF1
Location 2,583,085 – 2,583,175
Length 90
Max. P 0.599404
window858

overview

Window 8

Location 2,583,085 – 2,583,175
Length 90
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 83.23
Mean single sequence MFE -33.72
Consensus MFE -18.97
Energy contribution -19.37
Covariance contribution 0.39
Combinations/Pair 1.35
Mean z-score -2.79
Structure conservation index 0.56
SVM decision value 0.13
SVM RNA-class probability 0.599404
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2583085 90 + 20766785
AGAGCAGAGCAAACUUGGGCACUCGAAAUGUAUCUUUGAAAUUGCUGGGGAGCAG---CUCGGGGCAACCCGUUUG-UUCUGCUCAGCUCCU-----------UU
.(((((((((((((..((((..(((((.......)))))...((((....)))))---)))(((....))))))))-)))))))).......-----------.. ( -40.60)
>DroPse_CAF1 22815 102 + 1
AGAGUAGAGCAAAGUUGGGCACUUGAAAUGUAUCUUUGAAAUUGCUAGAAAACAG---CCCAAGGCAGAAGGCUUCCUUCUCUACUGCUGCUACGGCUGUUGAUU
..(((((..(((((....(((.......)))..)))))...)))))....(((((---((...(((((.(((........))).))))).....))))))).... ( -26.20)
>DroSec_CAF1 17176 90 + 1
AGAGCAGAGCAAACUUGGGCACUCGAAAUGUAUCUUUGGAAUUGCUGGGGAGCAG---CCCGGGGCAACCCGCUUG-UUCUGCUCAGCUCCU-----------UU
.(((((((((((.(..((((..((.(((......))).))..((((....)))))---)))(((....)))).)))-)))))))).......-----------.. ( -38.90)
>DroSim_CAF1 16387 90 + 1
AGAGCAGAGCAAACUUGGGCACUCGAAAUGUAUCUUUGGAAUUGCUGGGGAGCAG---CCCGGGGCAACCCGCUUG-UUCUGCUCAGCUCCU-----------UU
.(((((((((((.(..((((..((.(((......))).))..((((....)))))---)))(((....)))).)))-)))))))).......-----------.. ( -38.90)
>DroEre_CAF1 16176 87 + 1
AGAGCAGAGCAAACUUGGCCACUCGAAAUGUAUCUUUGAAAUUGCUGGAAAGCAG---CCCAGGGCAGCCCGCU----GCUCCCCAGCUCCU-----------UU
......((((......(((...(((((.......)))))...((((....)))))---))..((((((....))----))))....))))..-----------.. ( -25.50)
>DroYak_CAF1 16154 93 + 1
AGAGCAGAGCAAACUUGGGCACUCGAAAUGUAUCUUUGAAAUUGCUGGAAAGCAGCAUCCCAGGGCAACCCGCUUG-UUCUGCUUAGCUCCU-----------UU
.(((((((((((.((((((...(((((.......)))))..(((((....)))))...))))))((.....)))))-)))))))).......-----------.. ( -32.20)
>consensus
AGAGCAGAGCAAACUUGGGCACUCGAAAUGUAUCUUUGAAAUUGCUGGAAAGCAG___CCCAGGGCAACCCGCUUG_UUCUGCUCAGCUCCU___________UU
.((((.(((((..((((((...(((((.......)))))...((((....))))....))))))((.....)).......))))).))))............... (-18.97 = -19.37 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:49 2006