Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,730,511 – 14,730,620 |
Length | 109 |
Max. P | 0.813312 |
Location | 14,730,511 – 14,730,620 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 91.65 |
Mean single sequence MFE | -36.20 |
Consensus MFE | -29.68 |
Energy contribution | -30.40 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.09 |
Mean z-score | -1.59 |
Structure conservation index | 0.82 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14730511 109 + 20766785 GCUUCACUGCUUUCAAUUCAGCCUUUCGAUUCCGCAUCACUUUGCCGGAUCGAAGCUCAAACAAGAGCGGAAACAAUGAUGA------UGACGAGGUGAUGCUGGAGGAGAGGGC ((......))..........(((((.(..(((((((((((((((.((.((((..((((......))))(....)..))))..------)).))))))))))).))))..)))))) ( -40.50) >DroSec_CAF1 35762 109 + 1 GCUUCGAUGCUUUCAAUUCAGCCUUUCGAUUCCGCAUCAGUUUGCCGGAUCGAAGCUCAAACAAGAGUGGAAACAAUGAUGA------UGACGAGGUGAUGCUGGAGGAGCGGGC (((((((.(((........)))...))...(((((((((.((((.((.((((..((((......))))(....)..))))..------)).)))).)))))).)))))))).... ( -33.30) >DroSim_CAF1 38493 109 + 1 GCUUCGAUGCUUUCAAUUCAGCCUUUCGAUUCCGCAUCAGUUUGCCGGAUCGAAGCUCAAACAAGAGCGGAAACAAUGAUGA------UGACGAGGUGAUGCUGGAGGAGGGGGC ((......))..........((((((...((((((((((.((((.((.((((..((((......))))(....)..))))..------)).)))).)))))).))))..)))))) ( -35.60) >DroEre_CAF1 35710 109 + 1 GCUUCGCUGCUUUCAAUUCAGUCCUUCGAUUCCGCAUCACUUUGCCGGAUCGAAGCUCAAACAAGAGCGAAAACAAUGAUGA------UGAUGAGGUGAUAAAGGAGGAGCGGGC (((.((((.((((((.(((((((.((((((((.(((......))).))))))))((((......))))............))------)..)))).))).....))).))))))) ( -33.70) >DroYak_CAF1 36385 115 + 1 GCUUCGCUGCUUUCAAUUCAGCCUUUCGAUUCCGCAUCACUUUGCCGAAUCGAAGCUCAAACAAGAGCGGAAACAAUGAUGAUGUCGAUGAUGAGGUGAUGAAGGAGGUGCGGGC ((((((((.((((((..(((.(((((((((((.(((......))).))))))).((((......))))(....)..................))))))))))))).)))).)))) ( -37.90) >consensus GCUUCGCUGCUUUCAAUUCAGCCUUUCGAUUCCGCAUCACUUUGCCGGAUCGAAGCUCAAACAAGAGCGGAAACAAUGAUGA______UGACGAGGUGAUGCUGGAGGAGCGGGC (((.((((.((((....(((.(((((((((((.(((......))).))))))).((((......))))(....)..................)))))))....)))).))))))) (-29.68 = -30.40 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:44 2006