Locus 4477

Sequence ID 2R_DroMel_CAF1
Location 14,723,964 – 14,724,054
Length 90
Max. P 0.949952
window7162

overview

Window 2

Location 14,723,964 – 14,724,054
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 96.28
Mean single sequence MFE -15.80
Consensus MFE -15.07
Energy contribution -14.63
Covariance contribution -0.44
Combinations/Pair 1.13
Mean z-score -2.41
Structure conservation index 0.95
SVM decision value 1.40
SVM RNA-class probability 0.949952
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14723964 90 - 20766785
UAUCCUUCCUUCUGCCUCUUCGCUCCUUCCUUUGCGGCUUUUUGCAUUGGGCAAAAAAAGGGUUUACUUCUCCACGGCAUUCUCCCUUCC
.((((((..((.(((((...(((..........)))((.....))...))))).)).))))))........................... ( -15.30)
>DroSec_CAF1 29223 89 - 1
UAUCCUUCCUCCUGCCUCUUCCCUCCUUCCUUUGCGGCUUUUCGCAUUGGGCAAA-AAAGAGUUUACUUCUCCACGGCAUUCUCCCUUCC
............((((...........(((..(((((....)))))..)))....-...(((.......)))...))))........... ( -15.90)
>DroSim_CAF1 31967 89 - 1
UAUCCUUCCUCCUGCCUCUUCGCUCCUUCCUUUGCGGCUUUUCGCAUUGGGCAAA-AAAGGGUUUACUUCUCCACGGCAUUCUCCCUUCC
............((((...........(((..(((((....)))))..)))....-...(((........)))..))))........... ( -16.20)
>consensus
UAUCCUUCCUCCUGCCUCUUCGCUCCUUCCUUUGCGGCUUUUCGCAUUGGGCAAA_AAAGGGUUUACUUCUCCACGGCAUUCUCCCUUCC
............((((...........(((..(((((....)))))..)))........(((.......)))...))))........... (-15.07 = -14.63 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:43 2006