Locus 4476

Sequence ID 2R_DroMel_CAF1
Location 14,711,574 – 14,711,673
Length 99
Max. P 0.599542
window7161

overview

Window 1

Location 14,711,574 – 14,711,673
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 97.17
Mean single sequence MFE -19.70
Consensus MFE -17.79
Energy contribution -18.23
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.25
Structure conservation index 0.90
SVM decision value 0.13
SVM RNA-class probability 0.599542
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14711574 99 - 20766785
ACAGCGAACAAUGCUGAAAAACUCGGUUUAAAAUGAAUGGACAGCGGGAAUUGGACAGCGGAAAACUCGCAAAAAUGUCAUUUGAAAGUGUCCACAAAC
.(((((.....))))).....(((((((((.......)))))..))))...((((((((((.....)))).......((....))...))))))..... ( -20.40)
>DroSec_CAF1 16920 99 - 1
AGAGCGAACAAAGCUGAAAAACUCGGUUUAAAAUAAAUGGACAGCGGGAAUUGGACAGCGAAAAACUCGCAAAAAUGUCAUUUGAAAGUGUCCACAAAC
..........(((((((.....)))))))........((((((.(........((((((((.....)))).....))))........)))))))..... ( -20.59)
>DroSim_CAF1 19398 99 - 1
AGAGCGAACAAAGCUGAAAAACUCGGUUUAAAAUGAAUGGACAGCGGGAAUUGGACAGCGGGAAACUCGCAAAAAUGUCAUUUGAAAGUGUCCACAAAC
..........(((((((.....)))))))........((((((.(........((((((((....).))).....))))........)))))))..... ( -22.59)
>DroEre_CAF1 16575 99 - 1
AGAGCGAACAAAGCUGAAAAACUGGGUUUAAAAUGAAUGGACAGCGGGAAUUGGACAGCGGAAAACUCGCAAAAAUGUCAUUUGAAAGUGUCCACAAAC
..(((.......)))......(((.(((((.......)))))..)))....((((((((((.....)))).......((....))...))))))..... ( -17.70)
>DroYak_CAF1 17422 99 - 1
AGAGCGAACAAAGCAGAAAAACUCGGUUUAAAAUGAAUGGACAGCGGGAAUUGGACAGCGGAAAACUCGCAAAAAUGUCAUUUGAAAGUGUCCACAAAC
...((.......)).......(((((((((.......)))))..))))...((((((((((.....)))).......((....))...))))))..... ( -17.20)
>consensus
AGAGCGAACAAAGCUGAAAAACUCGGUUUAAAAUGAAUGGACAGCGGGAAUUGGACAGCGGAAAACUCGCAAAAAUGUCAUUUGAAAGUGUCCACAAAC
..........(((((((.....)))))))........((((((.(........((((((((.....)))).....))))........)))))))..... (-17.79 = -18.23 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:42 2006