| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,705,002 – 14,705,095 |
| Length | 93 |
| Max. P | 0.577910 |
| Location | 14,705,002 – 14,705,095 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 98.29 |
| Mean single sequence MFE | -17.24 |
| Consensus MFE | -17.00 |
| Energy contribution | -17.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.577910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14705002 93 - 20766785 GGCGCCUCCUGCAGCUCUGAUGGAAAUUCCCAUUUCCACAUUUCC-CCGCCCGCAACUGCAACUUCCGCCCUUUAUUUCUCGCUUUUGUUUCGG ((((.....(((((...((.(((((((....))))))))).....-..(....)..))))).....))))........................ ( -17.40) >DroSec_CAF1 10362 94 - 1 GGCGCCUCCUGCAGCUCUGAUGGAAAUUCCCAUUUCCACAUUUCCCCCGCCCGCAACUGCAACUUCCGCCCUUUAUUUCUCGCUUUUGUUUCGG ((((.....(((((...((.(((((((....)))))))))........(....)..))))).....))))........................ ( -17.40) >DroSim_CAF1 12834 94 - 1 GGCGCCUCCUGCAGCUCUGAUGGAAAUUCCCAUUUCCACAUUUCCCCCGCCCGCAACUGCAACUUCCGCCCUUUAUUUCUCGCUUUUGUUUCGG ((((.....(((((...((.(((((((....)))))))))........(....)..))))).....))))........................ ( -17.40) >DroEre_CAF1 10189 93 - 1 GGCGCCUCCUGCAGCUCUGAUGGAAAUUCCCAUUUCCACUUUUCC-CCGCCCGCAACUGCAACUUCCGCCCUUUAUUUCUCGCUUUUGUUUCGG ((((.....(((((......(((((((....))))))).......-..(....)..))))).....))))........................ ( -17.00) >DroYak_CAF1 10773 93 - 1 GGCGCCUCCUGCAGCUCUGAUGGAAAUUCCCAUUUCCACUUUUAC-CCGCCCGCAACUGCAACUUCCGCCCUUUAUUUCUCGCUUUUGUUUCGG ((((.....(((((......(((((((....))))))).......-..(....)..))))).....))))........................ ( -17.00) >consensus GGCGCCUCCUGCAGCUCUGAUGGAAAUUCCCAUUUCCACAUUUCC_CCGCCCGCAACUGCAACUUCCGCCCUUUAUUUCUCGCUUUUGUUUCGG ((((.....(((((......(((((((....)))))))..........(....)..))))).....))))........................ (-17.00 = -17.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:41 2006