Locus 4473

Sequence ID 2R_DroMel_CAF1
Location 14,701,764 – 14,701,854
Length 90
Max. P 0.596930
window7157

overview

Window 7

Location 14,701,764 – 14,701,854
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 93.56
Mean single sequence MFE -17.30
Consensus MFE -16.34
Energy contribution -16.68
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.94
SVM decision value 0.13
SVM RNA-class probability 0.596930
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14701764 90 + 20766785
CUUCUUCUUCUUGCCGCUCCUUGGCCACGCUAAACUUUGCAACGUCAGAGUUUGCCAUAUUAAAAUCAUCAUCAACGGCGUCCAAACAUC
............((((((....)))...((.((((((((......)))))))))).....................)))........... ( -14.80)
>DroEre_CAF1 7066 84 + 1
------CUUCUUGCCGCUCCUUGGCCCCGCUAAACUUUGCAACGUCAGAGUUUGCCAUAUUAAAAUCAUCAUCAGCGGCGUCCAAACAUC
------......((((((....(....)((.((((((((......))))))))))..................))))))........... ( -18.60)
>DroYak_CAF1 7159 84 + 1
------CUUCUUGCCGCUCCUUGGCCGCGCUAAACUUUGCAACGUCAGAGUUUGCCAUAUUAAAAUCAUCAUCAGCGGCGUCCAAACAUC
------......((((((...((((......((((((((......))))))))))))................))))))........... ( -18.51)
>consensus
______CUUCUUGCCGCUCCUUGGCCACGCUAAACUUUGCAACGUCAGAGUUUGCCAUAUUAAAAUCAUCAUCAGCGGCGUCCAAACAUC
............((((((...((((......((((((((......))))))))))))................))))))........... (-16.34 = -16.68 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:38 2006