Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,695,167 – 14,695,274 |
Length | 107 |
Max. P | 0.983953 |
Location | 14,695,167 – 14,695,274 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 86.82 |
Mean single sequence MFE | -21.78 |
Consensus MFE | -18.02 |
Energy contribution | -18.90 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.09 |
Mean z-score | -2.34 |
Structure conservation index | 0.83 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14695167 107 + 20766785 UUACAUAUCUCAAUGUGGAGUAUCAUUAUUGCUCACCACGCCACAUAAAUAAUAAAAUUGUAUGUGCGUUAAAAUGUAGAACGCAUUAAAUCAUAAAGGAGGAAUGU ..((((.((((..(((((((((.......)))))...((((.((((((((......))).)))))))))...(((((.....)))))....))))...)))).)))) ( -22.20) >DroSec_CAF1 556 96 + 1 UCACAUUUCUCAAUUUAGAGUAUCAUUAAUGCUCACCAAGCCACAUAAAU-----------ACUUGCGUUAAAAUGUAGAACGCAUUAAAUCAUAAAUGAGGAAUGU ..((((((((((.((((((((((.....))))))................-----------...((((((.........))))))........)))))))))))))) ( -23.00) >DroSim_CAF1 555 107 + 1 UCACUUUUCUCAAUUUAGAGUAUCAUUAAUGCUCACCAAGCGACAUAAAUAAUAAAAUUGUACUUGCGUUAAAAUGUAGAACGCAUUAAAUCAUAAAUGAGGAAUGU ..((.(((((((.((((((((((.....)))))).....((((((.............)))..((((((....))))))..))).........))))))))))).)) ( -19.12) >DroEre_CAF1 512 107 + 1 UCACAUUUCUCAAUAUAGAGUAACAUUAAUGCCCGCCAAGCCACAUAAGUAAUAAAAUGUUUCUUGCGUUAGAAUGUAGAACGCAUUAAAUCAUAAAUGAGGAAUGU ..((((((((((.....(((.((((((...((.......)).((....)).....)))))).)))(((((.........))))).............)))))))))) ( -20.10) >DroYak_CAF1 546 107 + 1 UCACAUUUCUCAAUAUGGAGUAUCAUUAAUAUUCGCCAAGCCACAUAAGUAAUAACAUGUUACUUGCGUUAAAAUGUAGAACGCAUUAAAUCAUAAAUGAGGAAUGU ..((((((((((.((((((((((.....))))))............(((((((.....)))))))(((((.........))))).......))))..)))))))))) ( -24.50) >consensus UCACAUUUCUCAAUAUAGAGUAUCAUUAAUGCUCACCAAGCCACAUAAAUAAUAAAAUGGUACUUGCGUUAAAAUGUAGAACGCAUUAAAUCAUAAAUGAGGAAUGU ..((((((((((.....((((((.....))))))..............................((((((.........))))))............)))))))))) (-18.02 = -18.90 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:31 2006