Locus 4467

Sequence ID 2R_DroMel_CAF1
Location 14,689,963 – 14,690,053
Length 90
Max. P 0.769855
window7147

overview

Window 7

Location 14,689,963 – 14,690,053
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 81.61
Mean single sequence MFE -15.12
Consensus MFE -11.34
Energy contribution -11.28
Covariance contribution -0.05
Combinations/Pair 1.20
Mean z-score -1.75
Structure conservation index 0.75
SVM decision value 0.53
SVM RNA-class probability 0.769855
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14689963 90 + 20766785
ACCCUGAAGAAGCGGCUCAGCCGCUCCAAGACACGCACCCUCUCGGCCGAUCAACCUAAUAAUAACAGUCAUAAGUCACUAUCAGCCACC
...((((.(.((((((...)))))).)..(((......((....))..(((................)))....)))....))))..... ( -15.59)
>DroVir_CAF1 19495 87 + 1
ACCCUCAAGAAACGGCUCAGCCGCUCCAAAACACGCACCCUCUCGGCUGACCAGCCGAAUAAC---AACCAUAAUUCACAAUCAGCCACC
.............((((.....((..........))......((((((....)))))).....---.................))))... ( -16.00)
>DroPse_CAF1 21180 87 + 1
ACCCUGAAGAAGCGGCUCAGCCGCUCCAAGACACGCACCCUCUCGGCAGAUCAGCCCAA---UAGCAAUCACAAAUCACUAUCAGCCACC
...((((.(.((((((...)))))).).......((........(((......)))...---..))...............))))..... ( -16.92)
>DroGri_CAF1 22614 87 + 1
ACUCUCAAGAAGCGGCUCAGCCGUUCCAAGACACGAACCCUAUCGGCAGAUCAGCCCAAUAAC---AACCAUAAAUCACAAUCAGUCACC
........(.((((((...)))))).)..(((..((......))(((......))).......---..................)))... ( -14.30)
>DroWil_CAF1 33246 82 + 1
ACCCUCAAGAAGCGACUUAGUCGCUCCAAGACACGUACCCUAUCGGCCGAUCAGCCCAA---UAACAAUCAUCAAAAACUUUCAC-----
........(.((((((...)))))).).................(((......)))...---.......................----- ( -11.00)
>DroPer_CAF1 27404 87 + 1
ACCCUGAAGAAGCGGCUCAGCCGCUCCAAGACACGCACCCUCUCGGCAGAUCAGCCCAA---UAGCAAUCACAAAUCACUAUCAGCCACC
...((((.(.((((((...)))))).).......((........(((......)))...---..))...............))))..... ( -16.92)
>consensus
ACCCUCAAGAAGCGGCUCAGCCGCUCCAAGACACGCACCCUCUCGGCAGAUCAGCCCAA___UA_CAAUCAUAAAUCACUAUCAGCCACC
........(.((((((...)))))).).................(((......))).................................. (-11.34 = -11.28 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:29 2006